Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilI   Type   Machinery gene
Locus tag   NLA_RS07070 Genome accession   NC_014752
Coordinates   1485886..1486497 (-) Length   203 a.a.
NCBI ID   WP_013449152.1    Uniprot ID   E4ZDY7
Organism   Neisseria lactamica 020-06     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1480886..1491497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLA_RS07035 (NLA_13450) dapC 1480954..1482141 (-) 1188 WP_013449148.1 succinyldiaminopimelate transaminase -
  NLA_RS07040 (NLA_13460) dut 1482219..1482671 (-) 453 WP_013449149.1 dUTP diphosphatase -
  NLA_RS07045 (NLA_13470) - 1482813..1483523 (+) 711 WP_036469214.1 AzlC family ABC transporter permease -
  NLA_RS07050 (NLA_13480) - 1483520..1483828 (+) 309 WP_003707454.1 AzlD family protein -
  NLA_RS07055 (NLA_13490) pilL 1483898..1484371 (-) 474 WP_025457170.1 PilX family type IV pilin Machinery gene
  NLA_RS07060 (NLA_13500) pilK 1484373..1484969 (-) 597 WP_003707450.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  NLA_RS07065 (NLA_13510) pilJ 1484948..1485889 (-) 942 WP_013449151.1 PilW family protein Machinery gene
  NLA_RS07070 (NLA_13520) pilI 1485886..1486497 (-) 612 WP_013449152.1 type IV pilus modification protein PilV Machinery gene
  NLA_RS07075 (NLA_13530) pilH 1486526..1487191 (-) 666 WP_013449153.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  NLA_RS07080 (NLA_13540) dnaB 1487336..1488748 (-) 1413 WP_013449154.1 replicative DNA helicase -
  NLA_RS07085 (NLA_13550) - 1488914..1489495 (+) 582 WP_013449155.1 superoxide dismutase -
  NLA_RS07090 (NLA_13560) - 1489560..1489892 (-) 333 WP_013449156.1 hypothetical protein -
  NLA_RS07095 (NLA_13570) cysT 1490079..1490915 (+) 837 WP_013449157.1 sulfate ABC transporter permease subunit CysT -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 21993.78 Da        Isoelectric Point: 4.7984

>NTDB_id=39070 NLA_RS07070 WP_013449152.1 1485886..1486497(-) (pilI) [Neisseria lactamica 020-06]
MKNNDCFRLKNPQSGMALIEVLVAMLVLTIGILALLSVQLRTVASVREAETQTIVSQITQNLMEGMLMNPTIDSDSNKKN
YNLYTGSYTPASSDGDFTLNNLKTKKDLAKAQLDRFGYELKNALPDAAAIHYAVCKDSSGNAPTLSDSGVFSSNCDNKAN
GDTLIKVLWVNDSAGDSDIARTNLEANGDNIVYTYQARVGGRE

Nucleotide


Download         Length: 612 bp        

>NTDB_id=39070 NLA_RS07070 WP_013449152.1 1485886..1486497(-) (pilI) [Neisseria lactamica 020-06]
ATGAAGAATAATGATTGCTTCCGCCTGAAAAATCCCCAGTCCGGTATGGCGCTGATAGAAGTCTTGGTTGCTATGCTCGT
TCTGACCATCGGTATTTTGGCATTGCTGTCCGTGCAGTTGCGGACGGTCGCTTCCGTCAGGGAGGCAGAAACGCAAACCA
TCGTCAGCCAAATCACGCAAAACCTGATGGAAGGGATGTTGATGAATCCGACCATTGATTCGGACAGCAACAAGAAAAAC
TATAATCTTTACACAGGGTCGTACACCCCCGCTTCCTCCGACGGCGATTTCACGCTTAATAATTTGAAAACCAAGAAGGA
TTTGGCAAAAGCCCAGTTGGACAGGTTCGGTTATGAATTGAAAAATGCCTTGCCGGATGCGGCAGCTATTCATTACGCCG
TCTGCAAAGATTCGTCGGGTAATGCGCCGACATTGTCCGACAGCGGTGTTTTTTCTTCAAATTGCGACAATAAGGCAAAC
GGAGATACTTTAATTAAAGTATTGTGGGTAAATGATTCGGCAGGGGATTCGGATATTGCCCGTACGAATCTTGAGGCGAA
CGGCGACAATATCGTATATACCTATCAGGCAAGGGTCGGAGGTCGGGAATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E4ZDY7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilI Neisseria gonorrhoeae MS11

89.655

100

0.897
  pilV Neisseria gonorrhoeae MS11

89.655

100

0.897
  pilV Neisseria meningitidis 8013

86.473

100

0.882

Multiple sequence alignment