Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   NLA_RS07060 Genome accession   NC_014752
Coordinates   1484373..1484969 (-) Length   198 a.a.
NCBI ID   WP_003707450.1    Uniprot ID   A0A1V0DU72
Organism   Neisseria lactamica 020-06     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1479373..1489969
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLA_RS13860 - 1479405..1479707 (-) 303 WP_231844345.1 hypothetical protein -
  NLA_RS07030 (NLA_13440) yaaA 1480020..1480799 (-) 780 WP_013449147.1 peroxide stress protein YaaA -
  NLA_RS07035 (NLA_13450) dapC 1480954..1482141 (-) 1188 WP_013449148.1 succinyldiaminopimelate transaminase -
  NLA_RS07040 (NLA_13460) dut 1482219..1482671 (-) 453 WP_013449149.1 dUTP diphosphatase -
  NLA_RS07045 (NLA_13470) - 1482813..1483523 (+) 711 WP_036469214.1 AzlC family ABC transporter permease -
  NLA_RS07050 (NLA_13480) - 1483520..1483828 (+) 309 WP_003707454.1 AzlD family protein -
  NLA_RS07055 (NLA_13490) pilL 1483898..1484371 (-) 474 WP_025457170.1 PilX family type IV pilin Machinery gene
  NLA_RS07060 (NLA_13500) pilK 1484373..1484969 (-) 597 WP_003707450.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  NLA_RS07065 (NLA_13510) pilJ 1484948..1485889 (-) 942 WP_013449151.1 PilW family protein Machinery gene
  NLA_RS07070 (NLA_13520) pilI 1485886..1486497 (-) 612 WP_013449152.1 type IV pilus modification protein PilV Machinery gene
  NLA_RS07075 (NLA_13530) pilH 1486526..1487191 (-) 666 WP_013449153.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  NLA_RS07080 (NLA_13540) dnaB 1487336..1488748 (-) 1413 WP_013449154.1 replicative DNA helicase -
  NLA_RS07085 (NLA_13550) - 1488914..1489495 (+) 582 WP_013449155.1 superoxide dismutase -
  NLA_RS07090 (NLA_13560) - 1489560..1489892 (-) 333 WP_013449156.1 hypothetical protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21808.69 Da        Isoelectric Point: 5.3292

>NTDB_id=39068 NLA_RS07060 WP_003707450.1 1484373..1484969(-) (pilK) [Neisseria lactamica 020-06]
MRKQNTLTGIPTSDGQKGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALRDGEFQVLDLEYTT
DSKVTFSENCENGLCTAVNVRTNNDNEEAFDNIVVQGKPTVEAVKRFCPANSTNLCIDNKGMVYGKGTGSVSKMPRYIIE
YLGVKNNQNIYRVTAKAWGKNANTVVVLQSYVSNNDEQ

Nucleotide


Download         Length: 597 bp        

>NTDB_id=39068 NLA_RS07060 WP_003707450.1 1484373..1484969(-) (pilK) [Neisseria lactamica 020-06]
ATGCGCAAACAGAACACTTTGACGGGAATCCCGACTTCTGACGGACAGAAAGGGTTTGCACTGTTTATCGTGCTGATGGT
GATGATCGTCGTGGCCTTTTTGGTTGTAACTGCCGCGCAGTCTTACAATACCGAGCAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGCGGGACGGCGAATTTCAGGTTTTGGATTTGGAATATACTACG
GACAGTAAGGTTACATTTAGCGAAAACTGTGAAAACGGTCTGTGTACCGCAGTGAATGTGCGGACAAATAATGATAATGA
AGAGGCTTTTGACAATATCGTGGTGCAAGGCAAGCCTACCGTTGAAGCCGTGAAGCGTTTTTGCCCTGCAAATTCTACCA
ACCTGTGTATTGACAATAAAGGGATGGTATATGGGAAAGGTACGGGAAGCGTCAGCAAAATGCCGCGTTATATTATCGAA
TATTTGGGTGTGAAGAATAACCAAAATATTTATAGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAATACCGTGGTCGT
CCTGCAATCTTATGTAAGCAATAATGATGAGCAATAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-192)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V0DU72

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

88.67

100

0.909

Multiple sequence alignment