Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL   Type   Machinery gene
Locus tag   NLA_RS07055 Genome accession   NC_014752
Coordinates   1483898..1484371 (-) Length   157 a.a.
NCBI ID   WP_025457170.1    Uniprot ID   -
Organism   Neisseria lactamica 020-06     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1478898..1489371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLA_RS07015 (NLA_13430) - 1479049..1479351 (+) 303 WP_003707465.1 hypothetical protein -
  NLA_RS13860 - 1479405..1479707 (-) 303 WP_231844345.1 hypothetical protein -
  NLA_RS07030 (NLA_13440) yaaA 1480020..1480799 (-) 780 WP_013449147.1 peroxide stress protein YaaA -
  NLA_RS07035 (NLA_13450) dapC 1480954..1482141 (-) 1188 WP_013449148.1 succinyldiaminopimelate transaminase -
  NLA_RS07040 (NLA_13460) dut 1482219..1482671 (-) 453 WP_013449149.1 dUTP diphosphatase -
  NLA_RS07045 (NLA_13470) - 1482813..1483523 (+) 711 WP_036469214.1 AzlC family ABC transporter permease -
  NLA_RS07050 (NLA_13480) - 1483520..1483828 (+) 309 WP_003707454.1 AzlD family protein -
  NLA_RS07055 (NLA_13490) pilL 1483898..1484371 (-) 474 WP_025457170.1 PilX family type IV pilin Machinery gene
  NLA_RS07060 (NLA_13500) pilK 1484373..1484969 (-) 597 WP_003707450.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  NLA_RS07065 (NLA_13510) pilJ 1484948..1485889 (-) 942 WP_013449151.1 PilW family protein Machinery gene
  NLA_RS07070 (NLA_13520) pilI 1485886..1486497 (-) 612 WP_013449152.1 type IV pilus modification protein PilV Machinery gene
  NLA_RS07075 (NLA_13530) pilH 1486526..1487191 (-) 666 WP_013449153.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  NLA_RS07080 (NLA_13540) dnaB 1487336..1488748 (-) 1413 WP_013449154.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17286.82 Da        Isoelectric Point: 9.1760

>NTDB_id=39067 NLA_RS07055 WP_025457170.1 1483898..1484371(-) (pilL) [Neisseria lactamica 020-06]
MEQKGFTLVEVMIVVAILGIISVIAIPSYQSYIEKGYQSQLYTEMVSINNAFKQIILKNPGESNQNLETELKKFAPAYRM
NPKIAEKYSVSGEFVDAAKSRAYRLVGVPKAGTGYTLSVWMNSVGDGYKCRDAASARAYSETLSADAGCEAFSNRKK

Nucleotide


Download         Length: 474 bp        

>NTDB_id=39067 NLA_RS07055 WP_025457170.1 1483898..1484371(-) (pilL) [Neisseria lactamica 020-06]
ATGGAACAAAAAGGGTTTACATTGGTTGAGGTAATGATAGTCGTCGCGATACTCGGCATCATCAGCGTCATTGCCATACC
TTCTTATCAAAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCAGTATCAACAATGCTTTCAAAC
AGATTATTTTGAAAAATCCCGGGGAAAGTAATCAGAACCTTGAAACGGAACTGAAGAAGTTTGCGCCGGCTTATAGGATG
AACCCGAAAATTGCTGAAAAATATAGTGTTTCGGGGGAATTTGTCGATGCGGCAAAATCAAGGGCATACAGGTTGGTCGG
CGTTCCGAAGGCGGGGACGGGTTATACTTTGTCGGTATGGATGAACAGCGTGGGCGACGGATACAAATGCCGTGATGCCG
CTTCTGCCCGAGCCTATTCGGAGACTTTGTCCGCGGATGCCGGCTGTGAAGCTTTCTCTAATCGTAAAAAATAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-25)

Minor type IV pilin, PilX (Pilin_PilX)

(31-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL Neisseria gonorrhoeae MS11

79.618

100

0.796
  pilX Neisseria meningitidis 8013

78.981

100

0.79

Multiple sequence alignment