Detailed information
Bioinformatically predicted
Overview
| Name | comD | Type | Machinery gene |
| Locus tag | F8B64_RS03030 | Genome accession | NZ_CP044497 |
| Coordinates | 603500..603913 (+) | Length | 137 a.a. |
| NCBI ID | WP_005693727.1 | Uniprot ID | - |
| Organism | Haemophilus influenzae strain PittGG | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 598500..608913
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F8B64_RS03010 (F8B64_03010) | - | 598988..601582 (-) | 2595 | WP_012055034.1 | penicillin-binding protein 1A | - |
| F8B64_RS03015 (F8B64_03015) | comA | 601681..602478 (+) | 798 | WP_012055033.1 | pilus assembly protein PilM | Machinery gene |
| F8B64_RS03020 (F8B64_03020) | comB | 602479..602985 (+) | 507 | WP_005693724.1 | competence protein ComB | Machinery gene |
| F8B64_RS03025 (F8B64_03025) | comC | 602982..603503 (+) | 522 | WP_012055032.1 | competence protein ComC | Machinery gene |
| F8B64_RS03030 (F8B64_03030) | comD | 603500..603913 (+) | 414 | WP_005693727.1 | pilus assembly protein PilP | Machinery gene |
| F8B64_RS03035 (F8B64_03035) | comE | 603923..605260 (+) | 1338 | WP_012055031.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| F8B64_RS03040 (F8B64_03040) | - | 605273..605959 (+) | 687 | WP_012055030.1 | ComF family protein | - |
| F8B64_RS03045 (F8B64_03045) | nfuA | 606035..606631 (+) | 597 | WP_005649300.1 | Fe-S biogenesis protein NfuA | - |
| F8B64_RS03050 (F8B64_03050) | nudC | 606698..607492 (+) | 795 | WP_012055029.1 | NAD(+) diphosphatase | - |
| F8B64_RS03055 (F8B64_03055) | - | 607528..608118 (+) | 591 | WP_012055028.1 | YjaG family protein | - |
| F8B64_RS03060 (F8B64_03060) | - | 608258..608530 (+) | 273 | WP_005630954.1 | HU family DNA-binding protein | - |
Sequence
Protein
Download Length: 137 a.a. Molecular weight: 15681.82 Da Isoelectric Point: 4.5625
>NTDB_id=390506 F8B64_RS03030 WP_005693727.1 603500..603913(+) (comD) [Haemophilus influenzae strain PittGG]
MKHWFFLIILFFMNCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQVYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
MKHWFFLIILFFMNCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQVYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
Nucleotide
Download Length: 414 bp
>NTDB_id=390506 F8B64_RS03030 WP_005693727.1 603500..603913(+) (comD) [Haemophilus influenzae strain PittGG]
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATGAATTGCAGTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAACAGACAGAAATAATTTCCTCAGATGTGCCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAGTTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGCAAGCTAGGAGAACAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATGAATTGCAGTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAACAGACAGAAATAATTTCCTCAGATGTGCCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAGTTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGCAAGCTAGGAGAACAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comD | Haemophilus influenzae Rd KW20 |
100 |
100 |
1 |
| comD | Haemophilus influenzae 86-028NP |
99.27 |
100 |
0.993 |