Detailed information
Bioinformatically predicted
Overview
| Name | comB | Type | Machinery gene |
| Locus tag | F8B64_RS03020 | Genome accession | NZ_CP044497 |
| Coordinates | 602479..602985 (+) | Length | 168 a.a. |
| NCBI ID | WP_005693724.1 | Uniprot ID | - |
| Organism | Haemophilus influenzae strain PittGG | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 597479..607985
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F8B64_RS03000 (F8B64_03000) | - | 597588..597917 (-) | 330 | WP_011961681.1 | YbaB/EbfC family nucleoid-associated protein | - |
| F8B64_RS03005 (F8B64_03005) | - | 598070..598915 (-) | 846 | WP_151433408.1 | 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ | - |
| F8B64_RS03010 (F8B64_03010) | - | 598988..601582 (-) | 2595 | WP_012055034.1 | penicillin-binding protein 1A | - |
| F8B64_RS03015 (F8B64_03015) | comA | 601681..602478 (+) | 798 | WP_012055033.1 | pilus assembly protein PilM | Machinery gene |
| F8B64_RS03020 (F8B64_03020) | comB | 602479..602985 (+) | 507 | WP_005693724.1 | competence protein ComB | Machinery gene |
| F8B64_RS03025 (F8B64_03025) | comC | 602982..603503 (+) | 522 | WP_012055032.1 | competence protein ComC | Machinery gene |
| F8B64_RS03030 (F8B64_03030) | comD | 603500..603913 (+) | 414 | WP_005693727.1 | pilus assembly protein PilP | Machinery gene |
| F8B64_RS03035 (F8B64_03035) | comE | 603923..605260 (+) | 1338 | WP_012055031.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| F8B64_RS03040 (F8B64_03040) | - | 605273..605959 (+) | 687 | WP_012055030.1 | ComF family protein | - |
| F8B64_RS03045 (F8B64_03045) | nfuA | 606035..606631 (+) | 597 | WP_005649300.1 | Fe-S biogenesis protein NfuA | - |
| F8B64_RS03050 (F8B64_03050) | nudC | 606698..607492 (+) | 795 | WP_012055029.1 | NAD(+) diphosphatase | - |
Sequence
Protein
Download Length: 168 a.a. Molecular weight: 19750.69 Da Isoelectric Point: 8.5473
>NTDB_id=390504 F8B64_RS03020 WP_005693724.1 602479..602985(+) (comB) [Haemophilus influenzae strain PittGG]
MSMNLLPWRTYQHQKRLRRLAFYIALFILLAINLMLAFSNLIEQQKQNLQAQQKSFEQLNQQLHKTTMQIDQLRIAVKVG
EVLTSIPNEQVKKSLQQLSELPFQQGELNKFKQDANNLSLEGNAQDQTEFELIHQFLKKHFPNVKLSQVQPEQDTLFFHF
DVEQGAEK
MSMNLLPWRTYQHQKRLRRLAFYIALFILLAINLMLAFSNLIEQQKQNLQAQQKSFEQLNQQLHKTTMQIDQLRIAVKVG
EVLTSIPNEQVKKSLQQLSELPFQQGELNKFKQDANNLSLEGNAQDQTEFELIHQFLKKHFPNVKLSQVQPEQDTLFFHF
DVEQGAEK
Nucleotide
Download Length: 507 bp
>NTDB_id=390504 F8B64_RS03020 WP_005693724.1 602479..602985(+) (comB) [Haemophilus influenzae strain PittGG]
ATGTCGATGAATTTATTGCCTTGGCGTACTTATCAACATCAAAAGCGTTTACGTCGTTTAGCTTTTTATATCGCTTTATT
TATCTTGCTTGCTATTAATTTAATGTTGGCTTTTAGCAATTTGATTGAACAACAGAAACAAAATTTGCAGGCACAGCAAA
AGTCGTTTGAACAACTTAATCAACAGCTTCATAAAACTACCATGCAAATTGATCAGTTACGCATTGCGGTGAAAGTTGGT
GAAGTTTTGACATCTATTCCCAACGAGCAAGTAAAAAAGAGTTTACAACAGCTAAGTGAATTACCTTTTCAACAAGGAGA
ACTGAATAAATTTAAACAAGATGCCAATAACTTAAGCTTGGAAGGTAACGCGCAAGATCAAACAGAATTTGAACTGATTC
ATCAATTTTTAAAGAAACATTTTCCCAATGTGAAATTAAGTCAGGTTCAACCTGAACAAGATACATTGTTTTTTCACTTT
GATGTGGAACAAGGGGCGGAAAAATGA
ATGTCGATGAATTTATTGCCTTGGCGTACTTATCAACATCAAAAGCGTTTACGTCGTTTAGCTTTTTATATCGCTTTATT
TATCTTGCTTGCTATTAATTTAATGTTGGCTTTTAGCAATTTGATTGAACAACAGAAACAAAATTTGCAGGCACAGCAAA
AGTCGTTTGAACAACTTAATCAACAGCTTCATAAAACTACCATGCAAATTGATCAGTTACGCATTGCGGTGAAAGTTGGT
GAAGTTTTGACATCTATTCCCAACGAGCAAGTAAAAAAGAGTTTACAACAGCTAAGTGAATTACCTTTTCAACAAGGAGA
ACTGAATAAATTTAAACAAGATGCCAATAACTTAAGCTTGGAAGGTAACGCGCAAGATCAAACAGAATTTGAACTGATTC
ATCAATTTTTAAAGAAACATTTTCCCAATGTGAAATTAAGTCAGGTTCAACCTGAACAAGATACATTGTTTTTTCACTTT
GATGTGGAACAAGGGGCGGAAAAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB | Haemophilus influenzae Rd KW20 |
100 |
100 |
1 |
| comB | Haemophilus influenzae 86-028NP |
98.81 |
100 |
0.988 |