Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   F8B64_RS03015 Genome accession   NZ_CP044497
Coordinates   601681..602478 (+) Length   265 a.a.
NCBI ID   WP_012055033.1    Uniprot ID   -
Organism   Haemophilus influenzae strain PittGG     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 596681..607478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F8B64_RS02995 (F8B64_02995) recR 596928..597530 (-) 603 WP_005626527.1 recombination mediator RecR -
  F8B64_RS03000 (F8B64_03000) - 597588..597917 (-) 330 WP_011961681.1 YbaB/EbfC family nucleoid-associated protein -
  F8B64_RS03005 (F8B64_03005) - 598070..598915 (-) 846 WP_151433408.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  F8B64_RS03010 (F8B64_03010) - 598988..601582 (-) 2595 WP_012055034.1 penicillin-binding protein 1A -
  F8B64_RS03015 (F8B64_03015) comA 601681..602478 (+) 798 WP_012055033.1 pilus assembly protein PilM Machinery gene
  F8B64_RS03020 (F8B64_03020) comB 602479..602985 (+) 507 WP_005693724.1 competence protein ComB Machinery gene
  F8B64_RS03025 (F8B64_03025) comC 602982..603503 (+) 522 WP_012055032.1 competence protein ComC Machinery gene
  F8B64_RS03030 (F8B64_03030) comD 603500..603913 (+) 414 WP_005693727.1 pilus assembly protein PilP Machinery gene
  F8B64_RS03035 (F8B64_03035) comE 603923..605260 (+) 1338 WP_012055031.1 type IV pilus secretin PilQ family protein Machinery gene
  F8B64_RS03040 (F8B64_03040) - 605273..605959 (+) 687 WP_012055030.1 ComF family protein -
  F8B64_RS03045 (F8B64_03045) nfuA 606035..606631 (+) 597 WP_005649300.1 Fe-S biogenesis protein NfuA -

Sequence

Protein


Download         Length: 265 a.a.        Molecular weight: 31552.92 Da        Isoelectric Point: 6.2348

>NTDB_id=390503 F8B64_RS03015 WP_012055033.1 601681..602478(+) (comA) [Haemophilus influenzae strain PittGG]
MQFSLKNYRTLQIGIHRKQGYFDFVWFDDLEQPQNYQIFVNDRYFKNRFLQQLKTQYQGKTFPLQFVASIPAHLTWSKVL
MLPQVLNAQECHQQCKFVIEKELPIFLEELWFDYRSTPLKQGFRLEVTAIRKSTAQTYLQDFQPFKINVLDVASNAVLRA
FQYLLNEQVRSENTLFLFQEDDYCLAICERSQQSQILQSHENLTALYEQFTERFEGQLEQVFVYQIPSSHTPLPENWQRV
ETELPFIALGNALWQKDLHQQKVGG

Nucleotide


Download         Length: 798 bp        

>NTDB_id=390503 F8B64_RS03015 WP_012055033.1 601681..602478(+) (comA) [Haemophilus influenzae strain PittGG]
ATGCAATTCTCCCTGAAAAATTACCGCACTTTACAAATCGGCATTCATCGTAAGCAGGGTTATTTTGATTTTGTGTGGTT
TGATGATCTTGAGCAGCCACAAAATTATCAAATCTTTGTTAATGATCGTTATTTTAAAAATCGTTTTTTACAACAGCTAA
AAACACAATATCAAGGGAAAACCTTTCCTTTGCAGTTTGTAGCAAGCATTCCCGCTCACTTAACTTGGTCGAAAGTATTA
ATGTTGCCACAAGTGTTAAATGCGCAAGAATGTCATCAACAATGTAAATTTGTGATTGAAAAAGAGCTGCCTATTTTTTT
AGAAGAATTGTGGTTTGATTATCGTTCTACCCCGTTAAAGCAAGGTTTTCGATTAGAGGTTACTGCAATTCGTAAAAGTA
CTGCTCAAACTTATTTGCAAGATTTTCAGCCATTTAAAATTAATGTATTGGATGTTGCGTCAAATGCTGTTTTGCGTGCA
TTTCAATATCTGTTGAATGAACAAGTGCGGTCAGAAAATACCTTATTTTTATTTCAAGAAGATGACTATTGCTTGGCGAT
TTGTGAAAGATCTCAGCAATCACAAATTTTACAATCTCACGAAAATTTGACCGCACTTTATGAACAATTTACCGAACGTT
TTGAAGGACAACTTGAACAAGTTTTTGTTTATCAAATTCCCTCAAGTCATACACCATTACCCGAAAACTGGCAGCGAGTA
GAAACAGAACTCCCTTTTATTGCGCTGGGCAACGCGCTATGGCAAAAAGATTTACATCAACAAAAAGTGGGTGGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Haemophilus influenzae Rd KW20

98.113

100

0.981
  comA Haemophilus influenzae 86-028NP

97.358

100

0.974

Multiple sequence alignment