Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnK   Type   Regulator
Locus tag   FSA28_RS05675 Genome accession   NZ_CP044495
Coordinates   1148211..1149518 (-) Length   435 a.a.
NCBI ID   WP_002291175.1    Uniprot ID   -
Organism   Streptococcus mutans strain UA140     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1143211..1154518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSA28_RS05645 (FSA28_0897) - 1143425..1144729 (-) 1305 WP_002266789.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  FSA28_RS05650 (FSA28_0898) - 1144793..1145551 (-) 759 WP_002270204.1 inositol monophosphatase family protein -
  FSA28_RS05655 (FSA28_0899) - 1145541..1145819 (-) 279 WP_002266791.1 UPF0223 family protein -
  FSA28_RS05660 (FSA28_0900) spx 1145812..1146225 (-) 414 WP_002263835.1 transcriptional regulator Spx -
  FSA28_RS05665 (FSA28_0901) - 1146286..1147206 (-) 921 WP_002266792.1 bifunctional riboflavin kinase/FAD synthetase -
  FSA28_RS05670 (FSA28_0902) truB 1147237..1148118 (-) 882 WP_002291173.1 tRNA pseudouridine(55) synthase TruB -
  FSA28_RS05675 (FSA28_0903) scnK 1148211..1149518 (-) 1308 WP_002291175.1 HAMP domain-containing sensor histidine kinase Regulator
  FSA28_RS05680 (FSA28_0904) scnR 1149519..1150208 (-) 690 WP_002291176.1 response regulator transcription factor Regulator
  FSA28_RS05690 (FSA28_0905) - 1150383..1151291 (+) 909 WP_002265500.1 ABC transporter ATP-binding protein -
  FSA28_RS05695 (FSA28_0906) - 1151291..1152031 (+) 741 WP_002265501.1 ABC transporter permease -
  FSA28_RS05700 (FSA28_0907) - 1152028..1152756 (+) 729 WP_002291178.1 ABC transporter permease -
  FSA28_RS05705 (FSA28_0908) - 1152883..1154247 (-) 1365 WP_002291180.1 DUF438 domain-containing protein -
  FSA28_RS05710 (FSA28_0909) - 1154247..1154480 (-) 234 WP_002262193.1 DUF1858 domain-containing protein -

Sequence

Protein


Download         Length: 435 a.a.        Molecular weight: 50005.97 Da        Isoelectric Point: 9.5467

>NTDB_id=390440 FSA28_RS05675 WP_002291175.1 1148211..1149518(-) (scnK) [Streptococcus mutans strain UA140]
MDTVKFFTKLLTKYVLLVFALIVGVIFVYGLVFLTYLNYYGKEKPELVYTKIAQSSQQDAFNISKRSQKEMDKQKTWAMV
LNQDGQIVQSYRLPQQLKRHYTNADMVKFSRWYLDDYPVFSYVRGQQILVFGYPKKYSLAKFNFYLNTQFIKNFLHLGFV
FLGIIFLFIFVLFSRSKLRIKKEIEPIVSALTFLSQGQSAALNEKGNLSEIKTALNETSHILEESNMMKEQWIRGVSHDL
RNPLMLISGYTSQLEQQYGHGKQTEQIENQIQNMKEMISDLNLSYLLDNQKCHSKFSSLDLAVVLRSVIADILNNYETVI
LHFDLPAEAVLVKGNATLLERAFRNLLLNSIRHSGSNQIDLTYQLFDNKVIIIIADKGTITAQKIVELNQKSTNYESHGM
GTVITKQIIKLHQGETVFSDNHPGLKVTIVLPCNG

Nucleotide


Download         Length: 1308 bp        

>NTDB_id=390440 FSA28_RS05675 WP_002291175.1 1148211..1149518(-) (scnK) [Streptococcus mutans strain UA140]
ATGGATACCGTTAAATTTTTTACGAAGTTATTGACCAAGTATGTTCTATTAGTATTTGCCTTAATTGTAGGAGTTATTTT
TGTTTATGGCTTGGTTTTCTTAACCTATCTTAATTATTATGGAAAGGAAAAACCAGAGCTAGTTTACACCAAAATCGCTC
AATCGAGTCAACAAGATGCGTTCAATATTAGTAAAAGAAGTCAAAAAGAAATGGATAAACAAAAGACTTGGGCTATGGTA
TTAAATCAAGATGGTCAGATCGTCCAATCTTATCGTTTACCTCAACAGCTCAAAAGACATTATACCAATGCTGATATGGT
GAAATTTTCGCGCTGGTATTTAGATGATTATCCTGTTTTTTCCTATGTACGTGGTCAGCAGATTTTAGTTTTTGGCTACC
CTAAAAAGTATTCCCTAGCAAAGTTTAATTTTTATCTGAATACGCAATTTATTAAGAATTTTCTTCATTTAGGGTTTGTT
TTCTTAGGCATCATCTTTTTATTTATCTTTGTTCTTTTTAGCCGTTCAAAGCTGCGCATTAAAAAGGAAATAGAGCCGAT
TGTCTCTGCGCTCACTTTCCTGTCGCAAGGTCAAAGTGCTGCTCTTAATGAAAAAGGCAATCTTTCTGAAATTAAGACAG
CTCTCAATGAAACTTCTCATATTTTAGAAGAAAGTAATATGATGAAAGAACAGTGGATTAGAGGAGTCAGTCACGATTTG
CGTAACCCGCTGATGCTGATTTCAGGCTACACCAGTCAATTGGAACAACAATATGGTCATGGAAAGCAAACGGAGCAGAT
TGAAAATCAGATTCAAAATATGAAAGAAATGATTTCTGATCTCAATTTGAGCTACCTGTTGGATAATCAAAAGTGTCATT
CCAAATTTTCAAGCCTTGATTTAGCTGTTGTTCTGCGATCCGTAATTGCTGATATTCTAAATAATTATGAAACAGTTATA
CTTCATTTTGATTTACCTGCAGAGGCGGTATTGGTAAAGGGTAATGCCACTTTATTAGAAAGGGCTTTTAGAAATCTTCT
GCTCAATAGTATCAGGCATAGTGGCTCTAATCAGATCGATTTGACTTATCAATTATTTGATAATAAAGTGATTATTATCA
TTGCAGATAAGGGAACTATTACAGCTCAGAAAATTGTAGAACTAAATCAAAAATCAACTAATTATGAGTCGCATGGCATG
GGCACCGTTATCACTAAGCAAATCATAAAACTTCATCAAGGTGAGACTGTCTTTTCAGATAATCATCCAGGTTTGAAAGT
GACGATTGTTTTGCCCTGTAACGGATGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(228-283)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(336-432)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnK Streptococcus mutans UA159

98.152

99.54

0.977

Multiple sequence alignment