Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   FSA28_RS05680 Genome accession   NZ_CP044495
Coordinates   1149519..1150208 (-) Length   229 a.a.
NCBI ID   WP_002291176.1    Uniprot ID   -
Organism   Streptococcus mutans strain UA140     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1144519..1155208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSA28_RS05650 (FSA28_0898) - 1144793..1145551 (-) 759 WP_002270204.1 inositol monophosphatase family protein -
  FSA28_RS05655 (FSA28_0899) - 1145541..1145819 (-) 279 WP_002266791.1 UPF0223 family protein -
  FSA28_RS05660 (FSA28_0900) spx 1145812..1146225 (-) 414 WP_002263835.1 transcriptional regulator Spx -
  FSA28_RS05665 (FSA28_0901) - 1146286..1147206 (-) 921 WP_002266792.1 bifunctional riboflavin kinase/FAD synthetase -
  FSA28_RS05670 (FSA28_0902) truB 1147237..1148118 (-) 882 WP_002291173.1 tRNA pseudouridine(55) synthase TruB -
  FSA28_RS05675 (FSA28_0903) scnK 1148211..1149518 (-) 1308 WP_002291175.1 HAMP domain-containing sensor histidine kinase Regulator
  FSA28_RS05680 (FSA28_0904) scnR 1149519..1150208 (-) 690 WP_002291176.1 response regulator transcription factor Regulator
  FSA28_RS05690 (FSA28_0905) - 1150383..1151291 (+) 909 WP_002265500.1 ABC transporter ATP-binding protein -
  FSA28_RS05695 (FSA28_0906) - 1151291..1152031 (+) 741 WP_002265501.1 ABC transporter permease -
  FSA28_RS05700 (FSA28_0907) - 1152028..1152756 (+) 729 WP_002291178.1 ABC transporter permease -
  FSA28_RS05705 (FSA28_0908) - 1152883..1154247 (-) 1365 WP_002291180.1 DUF438 domain-containing protein -
  FSA28_RS05710 (FSA28_0909) - 1154247..1154480 (-) 234 WP_002262193.1 DUF1858 domain-containing protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26192.55 Da        Isoelectric Point: 7.7909

>NTDB_id=390441 FSA28_RS05680 WP_002291176.1 1149519..1150208(-) (scnR) [Streptococcus mutans strain UA140]
MNYKEKKILILDDNPEILEMVQESLSIAGFNNLTSVQSKKEALEQLGKRSFDLAILDIMLPDGSGFEVLREIRKTSTMPV
LFLSAVSDIEKQYQGFELGADDYIVKPFRPKELELRILSILKRAYPEKDDTLILPTCQVNFSQALITKGELEIQLTAKEY
SILKVLYNNQNRIVTFDQLLGKVWGLQYQGYENTMMAHIRKIRQKIEANPSKPECLLTVKGLGYKLKVS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=390441 FSA28_RS05680 WP_002291176.1 1149519..1150208(-) (scnR) [Streptococcus mutans strain UA140]
ATGAATTATAAAGAGAAAAAAATCTTAATTTTAGATGACAATCCAGAAATTTTAGAAATGGTGCAAGAGTCTTTAAGCAT
TGCTGGTTTTAACAACCTAACAAGCGTGCAATCAAAAAAAGAGGCCTTGGAGCAACTTGGCAAAAGATCCTTTGATTTGG
CCATTTTAGACATTATGCTGCCTGATGGTTCGGGTTTTGAGGTACTAAGAGAAATTCGGAAAACTTCTACTATGCCAGTA
CTCTTTTTGTCTGCGGTATCCGACATTGAAAAGCAATACCAAGGTTTTGAGTTGGGAGCGGACGACTACATCGTCAAACC
TTTTCGTCCTAAGGAATTGGAGTTGCGAATCCTTTCTATTTTAAAAAGAGCCTATCCTGAAAAGGATGATACCCTTATTT
TACCTACTTGTCAGGTCAACTTTAGTCAAGCTTTGATTACCAAAGGAGAATTGGAAATTCAGTTGACAGCTAAGGAATAC
AGTATTCTTAAAGTTTTATATAACAATCAAAATCGCATTGTTACCTTTGATCAACTCTTAGGAAAAGTTTGGGGTCTGCA
ATATCAAGGCTATGAAAATACTATGATGGCGCATATTCGCAAGATCAGGCAAAAGATTGAAGCCAATCCTTCTAAGCCAG
AATGTTTACTGACAGTTAAGGGCTTGGGTTACAAACTAAAGGTGAGTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-117)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(152-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

98.253

100

0.983
  micA Streptococcus pneumoniae Cp1015

37.768

100

0.384
  vicR Streptococcus mutans UA159

35.776

100

0.362

Multiple sequence alignment