Detailed information    

insolico Bioinformatically predicted

Overview

Name   irvR   Type   Regulator
Locus tag   FSA28_RS06715 Genome accession   NZ_CP044495
Coordinates   1351655..1352548 (+) Length   297 a.a.
NCBI ID   WP_002276322.1    Uniprot ID   -
Organism   Streptococcus mutans strain UA140     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1346655..1357548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSA28_RS10615 (FSA28_1106) - 1348618..1348746 (-) 129 WP_002262718.1 hypothetical protein -
  FSA28_RS10555 - 1348781..1349011 (-) 231 WP_002282891.1 hypothetical protein -
  FSA28_RS06705 (FSA28_1107) - 1349141..1350892 (-) 1752 WP_002291077.1 GbpC/Spa domain-containing protein -
  FSA28_RS06710 (FSA28_1108) - 1351055..1351339 (-) 285 WP_002262720.1 helix-turn-helix transcriptional regulator -
  FSA28_RS06715 (FSA28_1109) irvR 1351655..1352548 (+) 894 WP_002276322.1 XRE family transcriptional regulator Regulator
  FSA28_RS06720 (FSA28_1114) - 1355064..1355441 (-) 378 WP_032526274.1 type II toxin-antitoxin system HicB family antitoxin -
  FSA28_RS06725 (FSA28_1115) - 1355459..1355650 (-) 192 WP_002290797.1 type II toxin-antitoxin system HicA family toxin -
  FSA28_RS06730 (FSA28_1116) csn2 1355747..1356409 (-) 663 WP_002290796.1 type II-A CRISPR-associated protein Csn2 -
  FSA28_RS06735 (FSA28_1117) cas2 1356399..1356743 (-) 345 WP_002263547.1 CRISPR-associated endonuclease Cas2 -

Sequence

Protein


Download         Length: 297 a.a.        Molecular weight: 33657.59 Da        Isoelectric Point: 8.0886

>NTDB_id=390443 FSA28_RS06715 WP_002276322.1 1351655..1352548(+) (irvR) [Streptococcus mutans strain UA140]
MGRGKLTPQDLEAMKAISANLQRLLAESGMKQSHLATILNIPTSSLNEYVKGKSLPKIGNIQKIADYFGLQKSDIDPRFA
SKKDSSTLDKINHIAKQLEMKRQIKVLDFCYQQSKEQKETVTIAADDKTSENTITSKSHHAEYQKIVDSYIAKELKDQTI
IHWDNVIKAKDLYQTLGRQHENIQIYGEVSAGTGIWVGHEKQETIKYPIPIPEHDIALTVNGNSMEPLFYNGDVIFVKKT
KAIHHGQIIVVIVNNEAYVKKLYRKNKEIRLISLNPDYDDIILKEDDTIEVIGTVIT

Nucleotide


Download         Length: 894 bp        

>NTDB_id=390443 FSA28_RS06715 WP_002276322.1 1351655..1352548(+) (irvR) [Streptococcus mutans strain UA140]
ATGGGACGCGGTAAATTAACTCCACAAGATTTAGAAGCAATGAAGGCTATTTCTGCCAATCTTCAAAGACTTCTAGCTGA
GAGCGGAATGAAACAATCTCACTTAGCTACTATCCTTAACATTCCTACAAGTAGTCTTAATGAATATGTTAAAGGAAAGA
GTTTGCCAAAAATAGGGAATATTCAAAAAATCGCAGATTACTTTGGTTTACAAAAATCCGATATTGACCCTAGATTTGCA
AGTAAAAAGGACTCTTCTACTCTTGATAAAATTAATCATATTGCCAAACAATTAGAAATGAAGAGACAGATAAAAGTCTT
AGATTTCTGTTACCAACAATCAAAAGAACAAAAAGAAACTGTGACCATAGCTGCTGACGATAAAACATCTGAAAATACGA
TTACCAGCAAATCTCATCATGCAGAATATCAAAAGATTGTCGACTCTTATATCGCCAAAGAGTTAAAAGATCAAACCATT
ATTCATTGGGACAATGTGATAAAAGCTAAAGATCTGTATCAAACCTTAGGACGTCAGCACGAAAACATTCAGATTTATGG
TGAAGTTTCAGCTGGTACTGGTATCTGGGTTGGACATGAAAAACAAGAAACCATTAAATACCCAATACCAATTCCAGAAC
ATGATATTGCTCTTACTGTCAATGGTAATAGTATGGAACCTTTATTTTACAACGGTGACGTTATTTTTGTTAAAAAGACT
AAAGCTATCCATCACGGACAAATTATCGTTGTTATTGTAAATAATGAGGCATATGTCAAAAAACTCTACCGAAAAAACAA
AGAAATTCGACTCATCTCATTAAATCCAGATTATGATGACATCATTTTAAAAGAAGATGATACAATTGAAGTCATCGGAA
CGGTCATTACCTAA

Domains

Predicted by InterproScan.

Peptidase S24-like (Peptidase_S24)

(184-296)

Helix-turn-helix (HTH_3)

(22-70)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  irvR Streptococcus mutans UA159

92.593

100

0.926

Multiple sequence alignment