Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/nlmT   Type   Regulator
Locus tag   FSA31_RS08540 Genome accession   NZ_CP044492
Coordinates   1710687..1712984 (-) Length   765 a.a.
NCBI ID   WP_002284754.1    Uniprot ID   -
Organism   Streptococcus mutans strain T8     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1705687..1717984
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSA31_RS08520 (FSA31_1687) - 1706180..1706650 (+) 471 WP_002263356.1 hypothetical protein -
  FSA31_RS08525 (FSA31_1688) - 1707525..1708517 (+) 993 WP_002265466.1 PTS sugar transporter subunit IIB -
  FSA31_RS08530 (FSA31_1689) - 1708552..1709370 (+) 819 WP_002263354.1 PTS mannose/fructose/sorbose transporter subunit IIC -
  FSA31_RS08535 (FSA31_1690) - 1709385..1710311 (+) 927 WP_002265465.1 PTS system mannose/fructose/sorbose family transporter subunit IID -
  FSA31_RS08540 (FSA31_1691) comA/nlmT 1710687..1712984 (-) 2298 WP_002284754.1 peptide cleavage/export ABC transporter Regulator
  FSA31_RS08545 (FSA31_1692) - 1713523..1713876 (-) 354 WP_002284753.1 hypothetical protein -
  FSA31_RS08550 (FSA31_1693) - 1714195..1714563 (+) 369 WP_002263350.1 DUF956 family protein -
  FSA31_RS08555 (FSA31_1694) - 1714800..1715873 (-) 1074 WP_002284752.1 acyltransferase -
  FSA31_RS08565 (FSA31_1695) serS 1716397..1717677 (+) 1281 WP_002284751.1 serine--tRNA ligase -

Sequence

Protein


Download         Length: 765 a.a.        Molecular weight: 86771.28 Da        Isoelectric Point: 8.1540

>NTDB_id=390316 FSA31_RS08540 WP_002284754.1 1710687..1712984(-) (comA/nlmT) [Streptococcus mutans strain T8]
MNTFSYLLLTVVLVLLVNLFLEFIKYFFKTTPAMNKVNSKKTSNFLWSRTRTRRFKFVPQVDNRDCGPAALASIAKHYGS
YYSLVHLRELTKTDRQGTTALGIIEAAKNIGFETYSLDADMSLFNYDDLIYPFIVHVVKNKRLQHYYVVYDDEGDSLIIG
DPDPSVKVIRMSKERFQHEWTGVAIFFSPKDDYQPQKDKRRGLTSFIPSFLKQKSLLFYIIMASLIITLIEIIGAFYLQV
MLDEYIPSQKISTLGFITLGLIITYVAQQIIAFAKEYLLIILGQRLVIDVILTYIKHIFILPMSFFSTRRTGEITSRFTD
ANQIIDAVASTIFSIFLDISMVFIVGGVLLIQNVVLFFLALLCVPIYIIIVFAFMKMFGYLNYEVMESNAIMSSSVIEDI
NGIETIKSLTSEEVSYQRIDKEFVDFLEKSFRLHKYGVIQVSIKTAAKLILNIVILWYGARLVMTGKISVGQMIAFNVLL
GYFSSPIENMINLQIKLQSARIANTRLNEVYLVDSEFENNGELSEGSFLDGDISFEKLSYKYGYGRDTLSDINLTIKKGS
KVSLVGASGSGKTTLVKMIVNFYEPIQGLIRLNGYDLKDIDKTVLRQHINYLPQQAYIFSGTIMDNLILGAKKDINQEDI
IRACEIAEIHSDIEQMPLGYQTELSDSTGVSGGQKQRIALARALLTQAPVLILDEATSSLDVLTEKKIVNNLMAMANKTI
VFVAHRLSIAQRTDRIIVMDQGKIVEEGSHKELLAHKGFYYKLFN

Nucleotide


Download         Length: 2298 bp        

>NTDB_id=390316 FSA31_RS08540 WP_002284754.1 1710687..1712984(-) (comA/nlmT) [Streptococcus mutans strain T8]
ATGAACACATTTTCTTATCTTCTTTTGACTGTAGTTTTAGTATTATTAGTCAATTTATTCTTAGAATTTATAAAATACTT
TTTTAAAACAACTCCAGCAATGAATAAGGTAAATTCTAAGAAAACTTCAAATTTTTTATGGAGTCGAACTCGAACTAGAC
GTTTTAAATTTGTACCACAAGTCGATAATAGAGACTGTGGCCCGGCTGCTCTAGCCTCTATTGCCAAACATTATGGTTCA
TATTATTCCTTGGTTCATCTGCGTGAACTTACAAAGACAGATCGACAAGGCACCACAGCATTAGGCATCATTGAAGCTGC
CAAAAATATTGGATTTGAAACTTACTCGTTAGATGCTGATATGTCTTTATTTAATTATGATGACCTTATTTACCCTTTTA
TTGTTCACGTTGTTAAAAATAAACGTCTTCAACATTACTATGTTGTTTATGACGATGAAGGAGATAGTCTAATCATCGGA
GATCCAGATCCTTCTGTCAAAGTTATTCGCATGTCTAAGGAGAGATTTCAGCATGAATGGACAGGTGTAGCTATCTTCTT
TTCTCCAAAGGATGATTATCAGCCTCAAAAAGATAAAAGAAGAGGATTAACAAGTTTCATACCTTCTTTTTTAAAGCAAA
AGAGTCTCTTGTTCTATATTATAATGGCGAGTTTAATCATTACTTTAATAGAAATTATTGGAGCTTTTTATCTCCAAGTA
ATGCTGGATGAGTATATTCCCAGTCAAAAAATTTCAACTTTAGGCTTTATCACTTTAGGATTGATAATAACTTATGTTGC
CCAACAAATAATAGCTTTTGCAAAAGAGTACTTATTAATTATATTAGGACAAAGGCTGGTAATTGATGTTATACTTACTT
ATATTAAGCACATTTTTATTCTTCCGATGTCTTTTTTTTCGACAAGACGAACGGGAGAAATCACATCTCGCTTCACTGAT
GCCAATCAAATTATTGATGCTGTGGCGTCAACAATTTTTTCTATTTTCTTAGACATTTCGATGGTATTTATAGTTGGTGG
AGTATTATTAATTCAAAATGTCGTTTTATTTTTCCTAGCCTTGCTCTGCGTTCCTATCTACATTATCATTGTTTTTGCAT
TTATGAAAATGTTTGGTTACTTAAACTATGAGGTAATGGAAAGTAATGCGATAATGTCTTCATCTGTTATTGAGGATATT
AATGGAATAGAAACTATCAAATCTTTGACGAGTGAAGAAGTTAGCTATCAGAGAATTGACAAGGAATTTGTTGATTTTTT
AGAGAAATCTTTTAGGCTGCATAAGTATGGAGTTATTCAAGTCTCAATTAAAACTGCTGCAAAGCTAATTTTGAATATCG
TTATTCTATGGTATGGAGCACGATTGGTTATGACCGGGAAAATTTCAGTGGGTCAAATGATTGCTTTTAACGTGCTTTTA
GGATATTTTTCAAGCCCAATTGAAAATATGATTAATTTACAAATTAAGCTCCAATCAGCCCGCATAGCTAATACGCGTCT
CAATGAAGTCTATCTAGTCGATTCTGAGTTTGAAAATAATGGGGAGCTTTCAGAAGGCAGCTTTTTGGATGGGGATATCT
CTTTTGAAAAGTTATCTTACAAGTATGGTTATGGTCGTGATACTCTGTCAGATATCAATCTAACTATTAAAAAAGGTTCA
AAGGTCAGTCTGGTCGGAGCCTCTGGTTCTGGTAAAACGACTCTTGTCAAGATGATTGTCAATTTTTATGAACCTATACA
GGGTCTTATCCGTCTTAATGGTTATGACCTAAAAGATATAGATAAGACTGTTTTACGCCAGCATATTAACTATCTCCCCC
AACAAGCTTATATCTTTAGTGGTACCATCATGGATAATCTGATCTTGGGAGCCAAGAAAGACATTAATCAGGAAGATATT
ATTCGAGCCTGTGAAATTGCTGAGATTCATTCAGACATTGAACAAATGCCGCTGGGGTACCAGACTGAGTTATCTGATAG
TACTGGAGTTTCCGGTGGCCAAAAGCAGCGGATTGCCTTGGCTCGCGCTCTCTTAACCCAAGCTCCAGTTTTGATTTTGG
ATGAAGCCACCAGCAGTCTGGATGTCCTGACTGAAAAGAAAATCGTCAACAACCTCATGGCCATGGCCAATAAGACTATT
GTTTTTGTGGCACACCGTTTGAGTATTGCTCAACGGACAGACCGAATTATTGTTATGGATCAAGGTAAGATTGTGGAAGA
AGGTAGCCATAAGGAACTTTTAGCTCATAAAGGCTTCTACTACAAGCTGTTTAACTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(217-486)

Peptidase C39 family (Peptidase_C39)

(55-191)

ABC transporter (ABC_tran)

(549-698)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/nlmT Streptococcus mutans UA159

72.655

98.954

0.719
  comA Streptococcus mitis NCTC 12261

62.113

92.81

0.576
  comA Streptococcus pneumoniae Rx1

61.268

92.81

0.569
  comA Streptococcus pneumoniae D39

61.268

92.81

0.569
  comA Streptococcus pneumoniae R6

61.268

92.81

0.569
  comA Streptococcus mitis SK321

61.268

92.81

0.569
  comA Streptococcus pneumoniae TIGR4

60.986

92.81

0.566
  comA Streptococcus gordonii str. Challis substr. CH1

59.664

93.333

0.557

Multiple sequence alignment