Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   FSC11_RS01430 Genome accession   NZ_CP044483
Coordinates   306730..307449 (+) Length   239 a.a.
NCBI ID   WP_026056744.1    Uniprot ID   -
Organism   Acinetobacter schindleri strain HZE30-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 301730..312449
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSC11_RS01415 (FSC11_01420) ponA 302339..304867 (-) 2529 WP_163164718.1 penicillin-binding protein PBP1a -
  FSC11_RS01420 (FSC11_01425) pilM 305037..306095 (+) 1059 WP_004810013.1 pilus assembly protein PilM Machinery gene
  FSC11_RS01425 (FSC11_01430) comN 306095..306736 (+) 642 WP_163164720.1 PilN domain-containing protein Machinery gene
  FSC11_RS01430 (FSC11_01435) comO 306730..307449 (+) 720 WP_026056744.1 type 4a pilus biogenesis protein PilO Machinery gene
  FSC11_RS01435 (FSC11_01440) pilP 307449..307976 (+) 528 WP_004810006.1 pilus assembly protein PilP Machinery gene
  FSC11_RS01440 (FSC11_01445) pilQ 307993..310092 (+) 2100 WP_163164722.1 type IV pilus secretin PilQ family protein Machinery gene
  FSC11_RS01445 (FSC11_01450) aroK 310129..310665 (+) 537 WP_004896271.1 shikimate kinase AroK -
  FSC11_RS01450 (FSC11_01455) aroB 310693..311772 (+) 1080 WP_163164724.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 239 a.a.        Molecular weight: 26948.52 Da        Isoelectric Point: 4.6463

>NTDB_id=390240 FSC11_RS01430 WP_026056744.1 306730..307449(+) (comO) [Acinetobacter schindleri strain HZE30-1]
MMSEQFDELGQEAVVVPKNKMTVEKFFQQFNTLDPNNYGSWPLAVKITCWVFIVFLVLMLAYFGLIRGKIESITQANAQE
QNLLNEFREKDSKLRNLQQYQQQLQDMEASFNQQLEQLPKETEIPGLVEDINLSGVNAGLKFKNIRLEPEVKQEFFIEQP
ISIEATGDYHAFGSFVSGIAGLSRIVTLHDFTITGTENKEKKTDIPVVDYTLKAKTYRYVGSANSASADTTAANSQGAQ

Nucleotide


Download         Length: 720 bp        

>NTDB_id=390240 FSC11_RS01430 WP_026056744.1 306730..307449(+) (comO) [Acinetobacter schindleri strain HZE30-1]
ATCATGAGCGAACAATTTGATGAATTAGGTCAGGAAGCTGTTGTTGTACCAAAAAATAAAATGACGGTAGAAAAGTTTTT
TCAGCAATTTAATACCCTCGATCCAAATAACTATGGTAGCTGGCCACTGGCTGTAAAGATTACCTGCTGGGTATTTATTG
TTTTTCTGGTTTTGATGCTGGCTTATTTCGGTCTGATTCGAGGCAAGATTGAATCAATTACTCAGGCCAATGCGCAAGAA
CAGAATCTGTTAAATGAATTCCGTGAGAAAGATTCCAAACTGCGTAATTTGCAACAATACCAACAGCAACTTCAGGATAT
GGAAGCAAGCTTTAACCAACAGCTTGAACAGTTACCAAAGGAAACTGAAATCCCAGGTCTGGTTGAAGATATTAACTTGA
GTGGTGTCAATGCCGGGCTGAAGTTTAAGAATATCCGTCTTGAACCTGAAGTAAAACAAGAGTTCTTTATTGAACAGCCA
ATTTCTATTGAAGCAACGGGTGATTATCATGCCTTTGGTTCATTTGTCAGCGGGATTGCAGGATTGTCTCGTATCGTGAC
GCTACACGACTTTACGATTACAGGCACTGAAAATAAAGAGAAGAAAACAGATATCCCGGTTGTAGATTATACCTTGAAGG
CAAAAACCTATCGTTATGTCGGTAGTGCCAACTCAGCATCGGCAGATACAACAGCTGCAAATAGTCAGGGGGCACAGTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Acinetobacter baylyi ADP1

69.362

98.326

0.682
  pilO Acinetobacter baumannii D1279779

68.584

94.561

0.649

Multiple sequence alignment