Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   FSC11_RS00970 Genome accession   NZ_CP044483
Coordinates   210835..212322 (-) Length   495 a.a.
NCBI ID   WP_163164629.1    Uniprot ID   -
Organism   Acinetobacter schindleri strain HZE30-1     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 205835..217322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSC11_RS00945 (FSC11_00950) - 205896..206294 (+) 399 WP_004810187.1 MAPEG family protein -
  FSC11_RS00950 (FSC11_00955) ppa 206415..206951 (+) 537 WP_163164623.1 inorganic diphosphatase -
  FSC11_RS00955 (FSC11_00960) - 207048..208349 (-) 1302 WP_163164625.1 OprD family outer membrane porin -
  FSC11_RS16205 - 208855..209337 (+) 483 WP_227590992.1 TorF family putative porin -
  FSC11_RS16210 - 209327..209623 (+) 297 WP_227590993.1 hypothetical protein -
  FSC11_RS00965 (FSC11_00970) - 209996..210775 (+) 780 WP_163164627.1 TorF family putative porin -
  FSC11_RS00970 (FSC11_00975) comM 210835..212322 (-) 1488 WP_163164629.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  FSC11_RS00975 (FSC11_00980) - 212387..212614 (-) 228 WP_004810171.1 accessory factor UbiK family protein -
  FSC11_RS00980 (FSC11_00985) glnK 212891..213229 (+) 339 WP_004281042.1 P-II family nitrogen regulator -
  FSC11_RS00985 (FSC11_00990) - 213289..214698 (+) 1410 WP_163164631.1 ammonium transporter -
  FSC11_RS00990 (FSC11_00995) nrdR 214838..215305 (+) 468 WP_004787309.1 transcriptional regulator NrdR -
  FSC11_RS00995 (FSC11_01000) ribD 215308..216396 (+) 1089 WP_163164634.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54517.57 Da        Isoelectric Point: 7.3779

>NTDB_id=390232 FSC11_RS00970 WP_163164629.1 210835..212322(-) (comM) [Acinetobacter schindleri strain HZE30-1]
MSFAKIHTRGLLGLHAPLIEVEVHVSQGMPSLTIVGLPEAAVRESKDRVRSAILNSGYQFPTKRLTINLAPADLPKDGSR
LDLPIALGILMASGQLPENCTDGMEFIGELALDGQLRPITGTLSIAIACQQSQHELILPKENAQEACQLPDFRVFAAAHL
KEVCDHLNRLAPLVQMQARPQVNHSDSRFDLADVKGQLRPRRALEIAAAGGHSLLFRGPPGTGKTLLASRLASILPPLNT
EENLEVASIYSIANNSHTFGQRPFRAPHHTASAVALVGGGSHPKPGEITLAHLGVLFLDELPEFDRKVLEVLRQPLESKE
IVISRASRQITFPANFQLVAAMNPCPCGYAFNQDIRCQCSPEMIKRYQNRISGPLLDRIDLHIDVPPLQAHELQSTQPVE
DSATVRERVITAYELQIQRQNKLNMALNPKELEQFAPLNAQTSKMFELAQQKLNLSARAYHRVLRVARSIADLAENSEIQ
PQHLSEALSYRGQQS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=390232 FSC11_RS00970 WP_163164629.1 210835..212322(-) (comM) [Acinetobacter schindleri strain HZE30-1]
ATGTCTTTTGCTAAAATCCATACCCGGGGATTGCTGGGACTGCATGCACCTTTAATAGAAGTTGAAGTTCATGTCAGTCA
GGGCATGCCCTCCTTAACTATTGTTGGACTGCCCGAAGCGGCGGTTCGGGAAAGTAAGGATCGGGTTCGTTCTGCTATTT
TGAATAGTGGCTACCAGTTCCCGACCAAACGCTTAACTATTAACCTGGCTCCTGCTGACCTGCCCAAAGACGGTTCACGT
TTAGATCTGCCAATTGCTTTAGGGATTCTGATGGCATCGGGGCAATTACCTGAAAACTGTACTGATGGAATGGAATTCAT
CGGTGAACTTGCTTTAGATGGTCAACTCCGCCCCATCACTGGTACGCTTAGTATTGCGATTGCCTGTCAACAATCGCAGC
ATGAACTGATTCTACCTAAAGAAAATGCTCAGGAAGCCTGTCAGTTACCTGATTTTCGGGTATTTGCCGCTGCTCATCTA
AAAGAAGTTTGTGATCATTTAAATAGACTCGCACCTTTAGTCCAGATGCAGGCCCGACCACAGGTGAATCACTCAGATTC
TCGCTTTGATTTAGCCGATGTCAAAGGCCAGCTGCGCCCAAGACGGGCTTTGGAAATTGCTGCTGCAGGTGGACATTCTT
TATTATTTAGAGGACCTCCTGGAACCGGTAAAACTTTACTGGCTTCGCGGCTAGCCAGTATCTTGCCGCCTCTCAATACT
GAAGAAAATCTTGAAGTCGCCAGTATTTATTCTATTGCCAATAATAGTCATACTTTTGGACAGCGTCCTTTCCGCGCGCC
ACATCATACCGCGTCTGCAGTTGCCCTGGTCGGTGGAGGATCGCATCCTAAACCAGGTGAAATTACGCTGGCACATCTAG
GTGTGTTATTTCTCGACGAACTGCCGGAATTTGACAGGAAAGTTCTTGAAGTATTGCGTCAACCTTTGGAATCCAAGGAA
ATTGTGATTTCGCGTGCCTCTCGACAAATTACTTTCCCAGCCAACTTTCAGCTGGTTGCAGCGATGAATCCCTGCCCTTG
TGGTTATGCCTTTAATCAGGATATTCGCTGCCAGTGTTCTCCAGAAATGATCAAGCGTTATCAGAACCGGATTTCTGGGC
CATTACTGGATCGGATTGACCTGCATATCGATGTGCCTCCTCTGCAAGCTCATGAATTACAATCTACACAACCGGTAGAA
GATTCTGCAACCGTTAGGGAGCGTGTGATAACTGCCTACGAACTGCAAATACAAAGACAGAACAAGCTGAATATGGCATT
AAACCCAAAAGAATTAGAGCAATTTGCGCCACTAAATGCTCAGACCAGTAAAATGTTTGAACTTGCCCAACAAAAGTTAA
ATTTATCTGCCCGTGCTTATCATCGGGTATTACGAGTAGCACGAAGCATAGCTGATTTAGCTGAGAATTCAGAAATTCAG
CCTCAGCATTTATCGGAAGCTTTATCTTATCGAGGTCAGCAAAGCTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

52.705

100

0.531
  comM Vibrio cholerae strain A1552

51.919

100

0.519
  comM Glaesserella parasuis strain SC1401

51.2

100

0.517
  comM Vibrio campbellii strain DS40M4

50.909

100

0.509
  comM Legionella pneumophila str. Paris

49.194

100

0.493
  comM Legionella pneumophila strain ERS1305867

49.194

100

0.493
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.012

100

0.477

Multiple sequence alignment