Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   FSC12_RS08625 Genome accession   NZ_CP044474
Coordinates   1825779..1827266 (-) Length   495 a.a.
NCBI ID   WP_163169034.1    Uniprot ID   -
Organism   Acinetobacter schindleri strain HZE33-1     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1820779..1832266
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSC12_RS08595 (FSC12_08675) - 1820837..1821235 (+) 399 WP_004810187.1 MAPEG family protein -
  FSC12_RS08600 (FSC12_08680) ppa 1821356..1821892 (+) 537 WP_004281037.1 inorganic diphosphatase -
  FSC12_RS08605 (FSC12_08685) - 1821991..1823292 (-) 1302 WP_163169030.1 OprD family outer membrane porin -
  FSC12_RS08610 (FSC12_08690) - 1823801..1824118 (+) 318 WP_163169031.1 TorF family putative porin -
  FSC12_RS08615 (FSC12_08695) - 1824262..1824564 (+) 303 WP_163169032.1 hypothetical protein -
  FSC12_RS08620 (FSC12_08700) - 1824937..1825719 (+) 783 WP_163169033.1 TorF family putative porin -
  FSC12_RS08625 (FSC12_08705) comM 1825779..1827266 (-) 1488 WP_163169034.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  FSC12_RS08630 (FSC12_08710) - 1827331..1827558 (-) 228 WP_004810171.1 accessory factor UbiK family protein -
  FSC12_RS08635 (FSC12_08715) glnK 1827835..1828173 (+) 339 WP_004281042.1 P-II family nitrogen regulator -
  FSC12_RS08640 (FSC12_08720) - 1828233..1829642 (+) 1410 WP_163169035.1 ammonium transporter -
  FSC12_RS08645 (FSC12_08725) nrdR 1829782..1830249 (+) 468 WP_004810168.1 transcriptional regulator NrdR -
  FSC12_RS08650 (FSC12_08730) ribD 1830252..1831340 (+) 1089 WP_163169036.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54526.58 Da        Isoelectric Point: 7.3971

>NTDB_id=390206 FSC12_RS08625 WP_163169034.1 1825779..1827266(-) (comM) [Acinetobacter schindleri strain HZE33-1]
MSFAKIHTRGLLGLHAPLIEVEVHVSQGMPSLTIVGLPEAAVRESKDRVRSAILNSGYQFPTKRLTINLAPADLPKDGSR
LDLPIALGILMASGQLPENCTDGMEFIGELALDGQLRPITGTLSIAIACQQSQHELILPKENAQEACQLPDFRVFAAAHL
KEVCDHLNRLAPLVQMQARPQVNHSDSRFDLADVKGQLRPRRALEIAAAGGHSLLFRGPPGTGKTLLASRLASILPPLNT
EENLEVASIYSIANNSHTFGQRPFRAPHHTASAVALVGGGSHPKPGEITLAHLGVLFLDELPEFDRKVLEVLRQPLESKE
IVISRASRQITFPANFQLVAAMNPCPCGYAFNQDIRCQCSPEMIKRYQNRISGPLLDRIDLHIDVPPLQAHELQSTQPVE
DSATVRERVITAYELQIQRQNKLNMALNPKELEQFAPLNAHTSKMFELAQQKLNLSARAYHRVLRVARSIADLAENSEIQ
PQHLSEALSYRGQQS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=390206 FSC12_RS08625 WP_163169034.1 1825779..1827266(-) (comM) [Acinetobacter schindleri strain HZE33-1]
ATGTCTTTTGCTAAAATCCATACCCGGGGATTGCTGGGACTGCATGCCCCTTTAATAGAAGTTGAAGTTCATGTCAGTCA
GGGCATGCCCTCCTTAACTATTGTTGGACTGCCCGAAGCGGCGGTTCGGGAAAGTAAGGATCGGGTTCGTTCTGCTATTT
TGAATAGTGGCTACCAGTTCCCGACCAAACGCTTAACTATTAACCTGGCTCCTGCTGACCTGCCCAAAGACGGTTCACGT
TTAGATCTGCCAATTGCTTTAGGGATTCTGATGGCATCGGGGCAATTACCTGAAAACTGTACTGATGGAATGGAATTCAT
CGGTGAACTTGCTTTAGATGGTCAACTCCGCCCCATCACTGGTACACTTAGTATTGCGATTGCCTGTCAACAATCGCAGC
ATGAACTGATTCTACCTAAAGAAAATGCTCAGGAAGCCTGTCAGTTACCTGATTTTCGGGTATTTGCCGCTGCTCATCTA
AAAGAAGTTTGTGATCATTTAAATAGACTCGCACCTTTAGTCCAGATGCAGGCCCGACCACAGGTGAATCACTCAGATTC
TCGCTTTGATTTAGCCGATGTCAAAGGCCAGCTGCGCCCAAGACGGGCTTTGGAAATTGCTGCTGCAGGTGGACATTCTT
TATTATTTAGAGGACCTCCTGGAACCGGTAAAACTTTACTGGCTTCGCGGCTAGCCAGTATCTTGCCGCCTCTCAATACT
GAAGAAAATCTTGAAGTCGCCAGTATTTATTCTATTGCCAATAATAGTCATACTTTTGGACAGCGTCCTTTCCGCGCGCC
ACATCATACCGCGTCTGCAGTTGCCCTAGTCGGTGGAGGATCGCATCCTAAACCAGGTGAAATTACACTGGCACATCTAG
GTGTGTTATTTCTGGACGAACTGCCGGAATTTGACAGGAAAGTTCTTGAAGTATTGCGTCAACCTTTGGAATCCAAGGAA
ATTGTGATTTCGCGTGCCTCTCGGCAAATCACTTTTCCAGCCAACTTTCAGCTGGTTGCAGCGATGAATCCCTGCCCTTG
TGGTTATGCTTTTAATCAGGATATTCGCTGCCAGTGTTCTCCGGAAATGATCAAGCGTTATCAGAACCGGATTTCTGGGC
CATTACTGGATCGGATTGACCTGCATATCGATGTGCCTCCTCTGCAAGCCCATGAATTACAATCTACACAACCGGTAGAA
GATTCTGCAACTGTTAGGGAGCGTGTGATAACTGCCTACGAACTGCAAATACAAAGACAGAACAAGCTGAATATGGCATT
AAACCCAAAAGAATTAGAGCAATTTGCGCCACTAAATGCTCATACCAGTAAAATGTTTGAACTTGCCCAACAAAAGTTAA
ATTTATCTGCCCGTGCTTATCATCGGGTATTACGAGTAGCACGAAGCATAGCTGATTTAGCTGAGAATTCAGAAATTCAG
CCTCAGCATTTATCGGAAGCTTTATCTTATCGAGGTCAGCAAAGCTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

52.705

100

0.531
  comM Vibrio cholerae strain A1552

51.919

100

0.519
  comM Glaesserella parasuis strain SC1401

51.2

100

0.517
  comM Vibrio campbellii strain DS40M4

50.909

100

0.509
  comM Legionella pneumophila str. Paris

49.194

100

0.493
  comM Legionella pneumophila strain ERS1305867

49.194

100

0.493
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.012

100

0.477

Multiple sequence alignment