Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   FSC10_RS01250 Genome accession   NZ_CP044463
Coordinates   253487..254974 (-) Length   495 a.a.
NCBI ID   WP_163170754.1    Uniprot ID   A0AAE7BW87
Organism   Acinetobacter schindleri strain HZE23-1     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 248487..259974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSC10_RS01220 (FSC10_01245) - 248525..248926 (+) 402 WP_163170750.1 MAPEG family protein -
  FSC10_RS01225 (FSC10_01250) ppa 249047..249583 (+) 537 WP_004281037.1 inorganic diphosphatase -
  FSC10_RS01230 (FSC10_01255) - 249682..251007 (-) 1326 WP_163170751.1 OprD family outer membrane porin -
  FSC10_RS01235 (FSC10_01260) - 251514..251813 (+) 300 WP_163170752.1 TorF family putative porin -
  FSC10_RS01245 (FSC10_01270) - 252651..253427 (+) 777 WP_163170753.1 TorF family putative porin -
  FSC10_RS01250 (FSC10_01275) comM 253487..254974 (-) 1488 WP_163170754.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  FSC10_RS01255 (FSC10_01280) - 255039..255266 (-) 228 WP_163170755.1 accessory factor UbiK family protein -
  FSC10_RS01260 (FSC10_01285) glnK 255543..255881 (+) 339 WP_004281042.1 P-II family nitrogen regulator -
  FSC10_RS01265 (FSC10_01290) - 255941..257350 (+) 1410 WP_163170756.1 ammonium transporter -
  FSC10_RS01270 (FSC10_01295) nrdR 257490..257957 (+) 468 WP_004810168.1 transcriptional regulator NrdR -
  FSC10_RS01275 (FSC10_01300) ribD 257960..259048 (+) 1089 WP_163170757.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54428.52 Da        Isoelectric Point: 7.5578

>NTDB_id=390151 FSC10_RS01250 WP_163170754.1 253487..254974(-) (comM) [Acinetobacter schindleri strain HZE23-1]
MSFAKIHTRGLLGLHAPLIEVEVHVSQGMPSLTIVGLPEAAVRESKDRVRSAILNSGYQFPTKRLTINLAPADLPKDGSR
LDLPIALGILMASGQLPENCTDGMEFIGELALDGQLRPIPGTLSIAIACQQSQHELILPKENAQEACQLPDFRVFAAAHL
KEVCDHLNRLAPLAQMQARPQVNHSASRFDLADVKGQLRPRRALEIAAAGGHSLLFRGPPGTGKTLLASRLASILPPLNT
EENLEVASIYSIANNSHTFGQRPFRAPHHTASAVALVGGGSHPKPGEITLAHLGVLFLDELPEFDRKVLEVLRQPLESKE
IVISRASRQITFPANFQLVAAMNPCPCGYAFNQDIRCQCSPEMIKRYQNRISGPLLDRIDLHIDVPPLQAHELQSTQPVE
DSATVRERVITAYELQIQRQNKLNMALTPKELEQFAPLNAQTSKMFELAQQKLNLSARAYHRVLRVARSIADLAENSEIQ
PQHLSEALSYRGQQS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=390151 FSC10_RS01250 WP_163170754.1 253487..254974(-) (comM) [Acinetobacter schindleri strain HZE23-1]
ATGTCTTTTGCTAAAATCCATACCCGGGGATTGCTGGGACTGCATGCCCCTTTAATAGAAGTTGAAGTTCATGTCAGTCA
GGGCATGCCCTCCTTAACTATTGTTGGACTGCCCGAAGCGGCGGTTCGGGAAAGTAAGGATCGGGTTCGTTCTGCTATTT
TGAATAGTGGCTACCAGTTCCCGACCAAACGCTTAACTATTAACCTGGCTCCTGCTGACCTGCCCAAAGACGGTTCACGT
TTAGATCTGCCAATTGCTTTAGGGATTCTGATGGCATCGGGGCAATTACCTGAAAACTGTACTGATGGAATGGAATTCAT
CGGTGAACTTGCTTTAGATGGTCAACTCCGCCCCATCCCTGGTACGCTTAGTATTGCGATTGCCTGTCAACAATCGCAGC
ATGAACTGATTCTACCTAAAGAAAATGCTCAGGAAGCCTGTCAGTTACCTGATTTTCGGGTATTTGCCGCTGCTCATCTA
AAAGAAGTTTGTGATCATTTAAATAGACTCGCACCTTTAGCCCAGATGCAGGCCCGACCACAGGTGAATCACTCAGCTTC
TCGCTTTGATTTAGCCGATGTCAAAGGCCAGCTGCGCCCAAGACGGGCTTTGGAAATTGCTGCTGCAGGTGGACATTCTT
TATTATTTAGAGGACCTCCTGGAACCGGTAAAACTTTACTGGCTTCGCGGCTAGCCAGTATCTTGCCGCCTCTCAATACT
GAAGAAAATCTTGAAGTCGCCAGTATTTATTCTATTGCCAATAATAGTCATACTTTTGGACAGCGTCCTTTCCGCGCGCC
ACATCATACCGCGTCTGCAGTTGCCCTGGTCGGTGGAGGATCGCATCCTAAACCAGGTGAAATTACGCTGGCACATCTAG
GTGTGTTATTTCTCGACGAACTGCCGGAATTTGACAGGAAAGTTCTTGAAGTATTGCGTCAACCTTTGGAATCCAAGGAA
ATTGTGATTTCGCGTGCCTCTCGACAAATTACTTTCCCAGCCAACTTTCAGCTGGTTGCAGCGATGAATCCCTGCCCTTG
TGGTTATGCCTTTAATCAGGATATTCGCTGCCAGTGTTCTCCAGAAATGATCAAGCGTTATCAGAACCGGATTTCTGGGC
CATTACTGGATCGGATTGACCTGCATATCGATGTGCCTCCTCTGCAAGCTCATGAATTACAATCTACACAACCGGTAGAA
GATTCTGCAACTGTTAGGGAGCGTGTGATAACTGCCTACGAACTGCAAATACAAAGACAGAACAAGCTGAATATGGCATT
AACCCCAAAAGAATTAGAGCAATTTGCGCCACTAAATGCTCAGACCAGTAAAATGTTTGAACTTGCCCAACAAAAGTTAA
ATTTATCTGCCCGTGCTTATCATCGGGTATTACGAGTAGCACGAAGCATAGCTGATTTAGCTGAGAATTCAGAAATTCAG
CCTCAGCATTTATCGGAAGCTTTATCTTATCGAGGTCAGCAAAGCTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

52.505

100

0.529
  comM Glaesserella parasuis strain SC1401

51.19

100

0.521
  comM Vibrio cholerae strain A1552

51.919

100

0.519
  comM Vibrio campbellii strain DS40M4

51.111

100

0.511
  comM Legionella pneumophila str. Paris

48.992

100

0.491
  comM Legionella pneumophila strain ERS1305867

48.992

100

0.491
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.012

100

0.477

Multiple sequence alignment