Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   MPQ_RS12315 Genome accession   NC_014733
Coordinates   2591011..2592501 (-) Length   496 a.a.
NCBI ID   WP_041362418.1    Uniprot ID   -
Organism   Methylovorus sp. MP688     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2586011..2597501
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPQ_RS12310 (MPQ_2523) - 2589954..2590997 (-) 1044 WP_013443287.1 VIT1/CCC1 transporter family protein -
  MPQ_RS12315 (MPQ_2524) comM 2591011..2592501 (-) 1491 WP_041362418.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  MPQ_RS12320 (MPQ_2525) - 2592511..2592777 (-) 267 WP_013443289.1 accessory factor UbiK family protein -
  MPQ_RS12325 (MPQ_2526) - 2593020..2593838 (+) 819 WP_013443290.1 TorF family putative porin -
  MPQ_RS12330 (MPQ_2527) glnK 2593936..2594274 (+) 339 WP_013443291.1 P-II family nitrogen regulator -
  MPQ_RS12335 (MPQ_2528) - 2594287..2595726 (+) 1440 WP_013443292.1 ammonium transporter -
  MPQ_RS12340 (MPQ_2529) gshA 2596145..2597422 (+) 1278 WP_041362419.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 53588.54 Da        Isoelectric Point: 7.3469

>NTDB_id=39012 MPQ_RS12315 WP_041362418.1 2591011..2592501(-) (comM) [Methylovorus sp. MP688]
MSLAVIKSRALCGMDAPPVDVEVHLANGFPSFTIVGLPEAEVKESKDRVRAALQTAQFEFPARRITVNLAPADLPKESGR
YDLPIAIGILAASGQLPIEGLAQYEMAGELALTGELRPVKGALAMTYKAWRDGRAFILPEASAAEAALVTDAQILPASSL
LAVCAHLLGQSPLALQQPEVPSTTLAYADFADVKGQAHAKRALEVAAAGGHSILMQGPPGTGKSMLAARLPGILPAMTEE
EALESAAIQSLNGAFRASAWRQRPYRAPHHTASAVALVGGGSVPRPGEISLAHHGILFLDEVPEFDRKVLEVLREPLESG
RITISRAARQADFPARFQLVAAMNPCPCGYLGHYNNKCRCTPDQVSRYRHRLSGPLMDRIDMHIEVPALRDDELLARESS
ESSDLVRRRVEAARALQVQRQGKANALLESHEIDIWCELDAQGQALVKQAINRLNLSARAYHRILKLARTIADLAGARDI
ATAHVAEAIQYRKHEI

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=39012 MPQ_RS12315 WP_041362418.1 2591011..2592501(-) (comM) [Methylovorus sp. MP688]
ATGTCACTTGCGGTCATTAAAAGTCGTGCATTGTGTGGCATGGATGCACCACCGGTGGATGTGGAAGTGCACCTTGCCAA
TGGGTTTCCCAGCTTTACGATAGTCGGTTTACCCGAAGCTGAGGTGAAGGAGAGCAAAGATAGAGTACGCGCTGCCCTGC
AGACGGCGCAGTTCGAATTTCCTGCTCGCCGCATTACGGTCAACCTGGCGCCTGCCGATCTTCCCAAGGAAAGTGGGCGC
TATGATTTGCCGATCGCGATCGGGATTCTGGCGGCGTCCGGCCAATTGCCGATAGAGGGTTTGGCGCAATATGAAATGGC
TGGAGAGCTCGCCCTTACCGGGGAGCTGCGCCCCGTCAAAGGGGCCTTGGCTATGACCTATAAAGCCTGGCGCGATGGCC
GGGCTTTTATTTTGCCCGAAGCCAGTGCAGCGGAGGCTGCGCTGGTGACGGATGCGCAGATACTGCCCGCCAGCAGTTTG
CTTGCGGTATGCGCGCATTTGCTTGGTCAGTCGCCGCTGGCATTGCAGCAGCCGGAAGTGCCATCCACCACGCTAGCTTA
TGCTGACTTCGCCGACGTGAAGGGGCAGGCACATGCCAAGCGTGCTCTGGAAGTGGCGGCGGCAGGGGGACACAGTATCT
TGATGCAAGGACCGCCGGGTACCGGGAAGTCTATGCTGGCCGCCAGATTGCCAGGCATTTTGCCCGCGATGACCGAAGAA
GAAGCATTGGAGTCTGCCGCCATTCAGTCGCTCAACGGCGCGTTTCGAGCAAGCGCGTGGCGGCAGCGGCCTTACCGCGC
GCCACACCACACGGCATCGGCGGTGGCGCTGGTGGGAGGCGGCAGTGTGCCACGCCCGGGCGAAATATCCCTGGCGCACC
ACGGCATTCTGTTTCTGGATGAAGTGCCGGAGTTTGATCGCAAGGTGCTTGAGGTGCTGCGCGAGCCGCTGGAATCGGGG
CGCATCACCATCTCCCGAGCTGCCCGGCAGGCGGACTTCCCCGCGCGCTTCCAGCTGGTAGCCGCGATGAATCCCTGCCC
TTGCGGGTATCTGGGGCATTACAACAATAAATGCCGCTGCACGCCTGACCAGGTGTCGCGCTACCGCCATCGTCTTTCCG
GCCCGCTGATGGATCGTATCGACATGCATATAGAAGTACCTGCCTTGCGCGACGATGAATTGCTGGCGCGTGAGAGCAGC
GAAAGCAGTGATCTGGTGCGTCGCCGTGTCGAGGCTGCGCGTGCGCTGCAAGTGCAACGCCAGGGGAAAGCCAATGCACT
ATTGGAAAGTCATGAGATCGATATCTGGTGCGAGCTGGATGCCCAAGGCCAAGCCTTGGTAAAGCAGGCCATCAATCGGC
TCAACCTGTCCGCCCGGGCGTATCATCGGATATTGAAGCTGGCCCGCACGATTGCCGATCTGGCGGGTGCCAGGGATATC
GCAACTGCGCATGTGGCCGAGGCGATTCAGTACCGCAAGCACGAAATATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.645

100

0.556
  comM Vibrio campbellii strain DS40M4

55.354

99.798

0.552
  comM Haemophilus influenzae Rd KW20

54.4

100

0.548
  comM Glaesserella parasuis strain SC1401

53.4

100

0.538
  comM Legionella pneumophila str. Paris

51.4

100

0.518
  comM Legionella pneumophila strain ERS1305867

51.4

100

0.518
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.931

100

0.478

Multiple sequence alignment