Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HJD23_RS10815 Genome accession   NZ_CP053109
Coordinates   2414074..2415699 (-) Length   541 a.a.
NCBI ID   WP_171114443.1    Uniprot ID   -
Organism   Streptomyces sp. Z423-1     
Function   promote branch migration; interact with DprA; integration of tDNA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2409074..2420699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HJD23_RS10790 rpsB 2409097..2409960 (-) 864 WP_171114446.1 30S ribosomal protein S2 -
  HJD23_RS10795 - 2410235..2410822 (+) 588 WP_171114445.1 M23 family metallopeptidase -
  HJD23_RS10800 - 2411156..2411710 (-) 555 WP_171118816.1 TetR/AcrR family transcriptional regulator -
  HJD23_RS10805 whiG 2411805..2412647 (-) 843 WP_141311108.1 RNA polymerase sigma factor WhiG -
  HJD23_RS10810 dprA 2412917..2414077 (-) 1161 WP_171114444.1 DNA-processing protein DprA -
  HJD23_RS10815 comM 2414074..2415699 (-) 1626 WP_171114443.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HJD23_RS10820 - 2415701..2416063 (-) 363 WP_171114442.1 YraN family protein -
  HJD23_RS10825 - 2416214..2416522 (-) 309 WP_003993268.1 DUF2469 domain-containing protein -
  HJD23_RS10830 - 2416579..2417103 (-) 525 WP_171114441.1 NUDIX domain-containing protein -
  HJD23_RS10835 lepB 2417093..2417857 (-) 765 WP_171114440.1 signal peptidase I -
  HJD23_RS10840 lepB 2418055..2419026 (-) 972 WP_171114439.1 signal peptidase I -
  HJD23_RS10845 lepB 2418914..2420008 (-) 1095 WP_171114438.1 signal peptidase I -

Sequence

Protein


Download         Length: 541 a.a.        Molecular weight: 56586.88 Da        Isoelectric Point: 6.5644

>NTDB_id=390115 HJD23_RS10815 WP_171114443.1 2414074..2415699(-) (comM) [Streptomyces sp. Z423-1]
MGFARTCSVALVGVEGVVVEVQADLEPGVAAFTLVGLPDKSLTESRDRVRAAVVNSGAEWPQKKLTVGLSPASVPKAGSG
FDLAVACAVLGASERIDPRVLADIVMIGELGLDGRVRPVRGILPAVLAAADAGYEQVVVPECAAAEASLVPGVSVLGVRS
LRQLIAVLADEPVPEEEPDAHDRPDPLLAGLRVPGTGSATGMHSVGAAQHDHGHDLADVVGQISARTAVEVAAAGGHHVF
LQGPPGAGKTMLAERLPGILPRLTREESLEVTAVHSVAGLLPPGKPLIDVAPYCAPHHSATMQALVGGGAGIARPGAVSL
SHRGVLFLDETPEFNSQALDALRQPLEAGHVVIARSAGVVRFPAKFLMVLAANPCPCGRFSQRDDLCECPPSAIRRYQAR
LSGPLLDRVDLRVEVDRVTRAELTDRGARGEPTAAVAERVRAARERAAARLAGTPWRTNSEVPGRELRSRWYAAIGAMDE
AERNLERGVLTARGLDRVLRVAWTVADLVGHDRPDATDVALALQLRTGVPRGVPMAIGALT

Nucleotide


Download         Length: 1626 bp        

>NTDB_id=390115 HJD23_RS10815 WP_171114443.1 2414074..2415699(-) (comM) [Streptomyces sp. Z423-1]
ATGGGCTTCGCACGTACGTGCTCCGTCGCCCTCGTCGGGGTCGAGGGCGTGGTGGTGGAGGTCCAGGCCGACCTGGAACC
GGGCGTCGCCGCGTTCACGCTGGTGGGGCTGCCGGACAAGAGCCTGACCGAGAGTCGGGATCGGGTGCGGGCGGCTGTGG
TGAATTCCGGCGCCGAATGGCCGCAGAAGAAGCTCACGGTCGGGCTCAGCCCGGCGTCCGTACCGAAGGCCGGCAGTGGG
TTCGACCTGGCCGTCGCCTGCGCGGTGCTGGGGGCCAGTGAGCGGATCGACCCGCGGGTGCTCGCCGACATCGTGATGAT
CGGAGAGCTCGGCCTGGACGGGCGGGTGCGGCCGGTGCGCGGCATCCTGCCGGCGGTGCTGGCGGCGGCGGACGCGGGCT
ATGAGCAGGTGGTCGTACCCGAGTGCGCGGCCGCCGAGGCGTCGCTGGTCCCGGGGGTGTCCGTGCTGGGCGTCCGCAGT
CTGCGCCAGCTGATCGCGGTCCTCGCGGACGAGCCCGTGCCGGAGGAGGAACCGGACGCGCACGACCGCCCCGATCCCCT
GCTCGCCGGGCTGCGCGTCCCCGGCACCGGCTCGGCCACGGGCATGCACAGCGTCGGCGCCGCCCAGCACGACCACGGGC
ACGATCTGGCCGACGTCGTGGGCCAGATCTCGGCGCGCACGGCGGTGGAGGTCGCCGCGGCCGGCGGACATCACGTGTTC
CTGCAGGGTCCGCCCGGCGCCGGCAAGACGATGCTCGCGGAGCGGCTGCCGGGGATCCTGCCCCGGCTCACCCGCGAGGA
GTCCCTGGAGGTCACGGCGGTGCACTCGGTGGCCGGGCTGCTGCCGCCCGGCAAGCCGCTGATCGACGTCGCCCCGTACT
GCGCCCCGCACCACTCGGCCACCATGCAGGCGCTCGTCGGCGGCGGCGCCGGCATCGCCCGGCCCGGCGCGGTGTCGCTC
TCGCATCGAGGGGTGCTGTTCCTCGACGAGACGCCGGAGTTCAACAGCCAGGCGCTCGACGCCCTGCGGCAGCCCCTGGA
GGCGGGGCATGTCGTGATCGCCCGCAGTGCCGGCGTGGTGCGGTTCCCGGCGAAGTTCCTGATGGTGCTCGCCGCCAACC
CCTGCCCGTGCGGGCGCTTCTCCCAGCGGGACGACCTGTGCGAGTGCCCGCCCTCGGCGATCCGCCGCTACCAGGCCCGG
CTGTCGGGACCGCTGCTGGACCGGGTCGACCTCCGCGTCGAGGTGGATCGCGTCACGCGGGCCGAGCTCACCGACCGCGG
CGCGCGCGGCGAGCCCACCGCGGCCGTCGCCGAACGCGTGCGCGCCGCCCGGGAACGGGCGGCCGCCCGCCTCGCGGGCA
CTCCGTGGCGGACGAACAGCGAGGTGCCCGGCCGGGAGCTGCGCAGCCGCTGGTACGCCGCGATCGGCGCGATGGACGAG
GCGGAACGGAATCTGGAGCGCGGTGTGCTCACGGCTCGCGGTCTCGACCGGGTCCTGCGGGTCGCCTGGACCGTGGCGGA
CCTCGTGGGGCACGACCGGCCCGACGCGACGGACGTGGCCCTGGCGCTGCAACTGCGCACCGGCGTGCCACGCGGTGTGC
CGATGGCCATCGGGGCCCTGACGTGA

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(430-526)

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(215-422)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae O1 biovar El Tor strain E7946

40.038

97.412

0.39
  comM Vibrio cholerae strain A1552

40.038

97.412

0.39
  comM Vibrio campbellii strain DS40M4

39.587

98.521

0.39
  comM Acinetobacter baylyi ADP1

39.376

94.824

0.373
  comM Haemophilus influenzae Rd KW20

37.925

97.967

0.372
  comM Legionella pneumophila str. Paris

37.57

98.891

0.372
  comM Legionella pneumophila strain ERS1305867

37.57

98.891

0.372
  comM Glaesserella parasuis strain SC1401

36.792

97.967

0.36