Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   FSC05_RS13205 Genome accession   NZ_CP044450
Coordinates   2763507..2764994 (+) Length   495 a.a.
NCBI ID   WP_163143144.1    Uniprot ID   -
Organism   Acinetobacter indicus strain MMS9-2     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 2758507..2769994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSC05_RS13180 (FSC05_13250) ribD 2759419..2760507 (-) 1089 WP_075167832.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  FSC05_RS13185 (FSC05_13255) nrdR 2760531..2760989 (-) 459 WP_005181550.1 transcriptional regulator NrdR -
  FSC05_RS13190 (FSC05_13260) - 2761129..2762532 (-) 1404 WP_163143141.1 ammonium transporter -
  FSC05_RS13195 (FSC05_13265) glnK 2762595..2762933 (-) 339 WP_004650081.1 P-II family nitrogen regulator -
  FSC05_RS13200 (FSC05_13270) - 2763210..2763437 (+) 228 WP_005181545.1 accessory factor UbiK family protein -
  FSC05_RS13205 (FSC05_13275) comM 2763507..2764994 (+) 1488 WP_163143144.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  FSC05_RS13210 (FSC05_13280) - 2765053..2765787 (-) 735 WP_075174922.1 TorF family putative porin -
  FSC05_RS13215 (FSC05_13285) - 2766548..2767888 (+) 1341 WP_163143147.1 OprD family outer membrane porin -
  FSC05_RS13220 (FSC05_13290) ppa 2767993..2768517 (-) 525 WP_016659718.1 inorganic diphosphatase -
  FSC05_RS13225 (FSC05_13295) - 2768635..2769036 (-) 402 WP_005181530.1 MAPEG family protein -
  FSC05_RS13230 (FSC05_13300) - 2769140..2769526 (+) 387 WP_005181526.1 hypothetical protein -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54136.15 Da        Isoelectric Point: 7.3353

>NTDB_id=390101 FSC05_RS13205 WP_163143144.1 2763507..2764994(+) (comM) [Acinetobacter indicus strain MMS9-2]
MSFAKIYTRGLLGLNAPSIEVEVHLSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILIASGQLPEQAAENLEFIGELALDGQLRPVTGTLSIAIACQAAGHQLLLPEPNAQEAAQLPDFQVFAASHL
KQVCEHLAQAAPLQPFAASSETRLERYAFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLASILPPLNM
QENLEVASIYSIANTPHRFGQRPFRAPHHTASAIALVGGGSHPKPGEITLAHLGVLFLDELPEFDRKVLEVLRQPLESKE
IVISRASRQITFPASFQLIAAMNPCPCGYAFNQDIRCQCSSEMIKRYQNRISGPLLDRIDLHIDVPPLQAHELQSTQPVE
DSATVRERVITAYELQMQRQNKLNMALNPKELEQFAPLNAQTSKMFELAQQKLNLSARAYHRVLRVARSIADLAENSEIQ
PQHLSEALSYRGQQS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=390101 FSC05_RS13205 WP_163143144.1 2763507..2764994(+) (comM) [Acinetobacter indicus strain MMS9-2]
ATGTCTTTTGCCAAAATTTATACGCGGGGTCTGCTTGGACTGAATGCCCCGTCCATTGAAGTTGAAGTCCATTTAAGTCA
GGGTCTGCCCTCCTTAACCATTGTCGGTCTGGCCGAAGCCGCGGTCCGTGAAAGTAAAGACCGGGTTCGCTCGGCCATTA
TTAACAGTGGTTTTCAGTTTCCCACCAAACGTTTGACCATTAATCTGGCCCCGGCCGATTTACCCAAAGATGGCTCACGT
CTGGATTTACCGATTGCCTTAGGCATTCTGATTGCTTCCGGACAATTGCCCGAACAGGCCGCAGAAAACCTGGAATTTAT
TGGTGAACTGGCGCTGGATGGCCAGTTACGCCCGGTCACCGGCACTTTAAGTATTGCCATTGCCTGTCAGGCGGCCGGCC
ATCAACTGTTATTACCGGAACCCAATGCACAGGAAGCCGCACAACTGCCTGACTTTCAGGTGTTTGCAGCCAGTCATCTG
AAACAGGTCTGTGAGCATCTGGCGCAGGCTGCGCCCCTACAGCCTTTTGCAGCAAGCTCGGAAACCCGCTTGGAGCGCTA
TGCTTTTGATCTGGCGGATGTCAAAGGACAGCTGCGACCTCGGCGTGCCCTGGAAATTGCCGCTGCCGGTGGCCATTCCT
TGCTCTTTAAAGGTCCACCCGGTACAGGCAAGACTCTCTTGGCCTCACGTCTGGCCAGTATTTTGCCGCCCCTGAATATG
CAGGAAAATCTTGAAGTTGCCAGTATTTATTCAATTGCCAATACCCCGCATCGCTTTGGACAGCGGCCATTTCGCGCCCC
GCATCATACCGCTTCAGCGATTGCGCTGGTCGGTGGTGGCTCACATCCAAAACCGGGCGAAATTACCCTGGCCCATTTAG
GTGTGCTGTTTTTAGATGAACTGCCGGAGTTTGACCGTAAAGTGCTGGAAGTATTGCGGCAGCCCTTGGAATCCAAGGAA
ATTGTAATTTCCCGGGCATCGCGGCAGATTACCTTTCCGGCCAGTTTCCAGCTGATTGCCGCGATGAACCCCTGCCCGTG
TGGCTATGCGTTTAATCAGGATATTCGCTGCCAGTGTTCTTCGGAAATGATCAAGCGTTATCAGAACCGGATTTCTGGGC
CATTACTGGATCGGATTGACCTGCATATCGATGTGCCTCCTCTGCAAGCTCATGAATTACAATCTACACAACCGGTAGAA
GATTCTGCAACCGTTAGGGAGCGTGTGATAACTGCCTACGAACTGCAAATGCAAAGACAGAACAAGCTGAATATGGCATT
AAACCCAAAAGAATTAGAGCAATTTGCGCCACTAAATGCTCAGACCAGTAAAATGTTTGAACTTGCCCAACAAAAGTTAA
ATTTATCTGCCCGTGCTTATCATCGGGTATTACGAGTAGCACGAAGCATAGCTGATTTAGCTGAGAATTCAGAAATTCAG
CCTCAGCATTTATCGGAAGCTTTATCTTATCGAGGTCAGCAAAGCTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

51.6

100

0.521
  comM Glaesserella parasuis strain SC1401

50.902

100

0.513
  comM Legionella pneumophila str. Paris

50.605

100

0.507
  comM Legionella pneumophila strain ERS1305867

50.605

100

0.507
  comM Vibrio cholerae strain A1552

50.707

100

0.507
  comM Vibrio campbellii strain DS40M4

50.303

100

0.503
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.139

100

0.471

Multiple sequence alignment