Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   FSC02_RS01060 Genome accession   NZ_CP044445
Coordinates   227608..229098 (-) Length   496 a.a.
NCBI ID   WP_127801552.1    Uniprot ID   -
Organism   Acinetobacter indicus strain CMG3-2     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 222608..234098
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSC02_RS01035 (FSC02_01060) - 223071..223451 (-) 381 WP_104470544.1 hypothetical protein -
  FSC02_RS01040 (FSC02_01065) - 223555..223956 (+) 402 WP_005181530.1 MAPEG family protein -
  FSC02_RS01045 (FSC02_01070) ppa 224074..224598 (+) 525 WP_005181532.1 inorganic diphosphatase -
  FSC02_RS01050 (FSC02_01075) - 224699..226012 (-) 1314 WP_104484380.1 OprD family outer membrane porin -
  FSC02_RS01055 (FSC02_01080) - 226773..227534 (+) 762 WP_127801551.1 TorF family putative porin -
  FSC02_RS01060 (FSC02_01085) comM 227608..229098 (-) 1491 WP_127801552.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  FSC02_RS01065 (FSC02_01090) - 229168..229395 (-) 228 WP_016659711.1 accessory factor UbiK family protein -
  FSC02_RS01070 (FSC02_01095) glnK 229672..230010 (+) 339 WP_004650081.1 P-II family nitrogen regulator -
  FSC02_RS01075 (FSC02_01100) - 230073..231476 (+) 1404 WP_005181548.1 ammonium transporter -
  FSC02_RS01080 (FSC02_01105) nrdR 231616..232074 (+) 459 WP_005181550.1 transcriptional regulator NrdR -
  FSC02_RS01085 (FSC02_01110) ribD 232098..233186 (+) 1089 WP_127801553.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 54071.05 Da        Isoelectric Point: 7.5671

>NTDB_id=390029 FSC02_RS01060 WP_127801552.1 227608..229098(-) (comM) [Acinetobacter indicus strain CMG3-2]
MSFAKIYTRGLLGLNAPSIEVEVHLSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILIASGQLPEQAAENLEFIGELALDGQLRPVTGTLSIAIACQAAGHQLVLPEPNAQEAAQLPDFQVFAASHL
KQVCEHLAQAAPLQPFAASSETRLERYAFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLASILPPLNM
QENLEVASIYSIANTPHRFGQRPFRAPHHTASAIALVGGGSHPKPGEITLAHLGVLFLDELPEFDRKVLEVLRQPLESKE
IVISRASRQITFPASFQLIAAMNPCPCGYAFNQDIRCQCSAESIKRYQNRISGPLLDRIDLHIDVPPLQAHELHDKTAVE
NSDTVRQRVIQAYERQMQRQGMLNMNLSPKQLEQFAALATPAQNMMDLAQQRLNLSARAYHRVLRVARSIADLAESSEIQ
TAHLSEALSYRAQPSP

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=390029 FSC02_RS01060 WP_127801552.1 227608..229098(-) (comM) [Acinetobacter indicus strain CMG3-2]
ATGTCTTTTGCCAAAATTTATACGCGGGGTCTGCTTGGACTGAATGCCCCGTCCATTGAAGTTGAAGTCCATTTAAGTCA
GGGTCTGCCCTCCTTAACCATTGTCGGTCTGGCCGAAGCCGCGGTCCGTGAAAGTAAAGACCGGGTTCGCTCGGCCATTA
TTAACAGTGGTTTTCAGTTTCCCACCAAACGTTTGACCATTAATCTGGCCCCGGCCGATTTACCCAAAGATGGCTCACGT
CTGGATTTACCGATTGCCTTAGGCATTCTGATTGCTTCCGGACAATTGCCCGAACAGGCCGCAGAAAACCTGGAATTTAT
TGGTGAACTGGCGCTGGATGGCCAATTGCGTCCGGTCACCGGCACTTTAAGTATTGCCATTGCCTGTCAGGCGGCCGGCC
ATCAACTGGTATTACCGGAACCCAATGCACAGGAAGCCGCACAATTGCCCGACTTTCAGGTGTTTGCGGCCAGTCATCTG
AAACAGGTCTGTGAGCATCTGGCGCAGGCTGCGCCCCTACAGCCTTTTGCAGCAAGCTCGGAAACCCGCTTGGAACGCTA
TGCTTTTGACCTGGCGGATGTCAAAGGACAGCTGCGACCTCGGCGTGCCCTGGAAATTGCCGCTGCCGGTGGCCATTCCC
TGCTTTTTAAAGGACCGCCCGGCACAGGCAAAACCCTCTTGGCCTCACGTCTGGCCAGTATTTTGCCGCCCCTGAATATG
CAGGAAAATCTTGAAGTTGCCAGTATTTATTCAATTGCCAATACCCCGCATCGCTTTGGACAGCGGCCATTTCGCGCCCC
GCATCATACCGCTTCAGCGATTGCGCTGGTCGGTGGTGGCTCACATCCAAAACCGGGCGAAATTACCCTGGCCCATTTAG
GTGTGCTGTTTTTAGATGAACTGCCGGAGTTTGACCGTAAAGTGCTGGAAGTATTGCGGCAGCCCTTGGAATCCAAGGAA
ATTGTAATTTCCCGGGCATCGCGGCAGATTACCTTTCCGGCCAGTTTCCAGCTGATTGCCGCGATGAACCCCTGCCCGTG
TGGCTATGCGTTTAATCAGGATATTCGCTGCCAATGTTCCGCAGAAAGTATTAAACGCTACCAGAACCGGATTTCTGGCC
CACTCCTGGACCGGATTGATTTGCATATTGATGTACCACCATTACAGGCCCATGAGTTACATGATAAAACTGCGGTGGAA
AACTCAGATACGGTTCGCCAGCGGGTGATTCAGGCCTATGAACGGCAAATGCAACGCCAAGGTATGCTGAATATGAACTT
AAGTCCAAAACAGCTGGAACAGTTTGCTGCCTTAGCCACTCCAGCACAGAACATGATGGATCTGGCTCAGCAACGTTTAA
ACCTGTCGGCTCGCGCCTATCATCGGGTCTTAAGGGTGGCGCGCAGTATTGCCGATTTGGCCGAAAGTAGCGAAATTCAG
ACCGCTCATTTATCGGAAGCGCTGTCTTATCGGGCGCAGCCCAGCCCATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

50.806

100

0.508
  comM Legionella pneumophila str. Paris

50.806

100

0.508
  comM Legionella pneumophila strain ERS1305867

50.806

100

0.508
  comM Haemophilus influenzae Rd KW20

49.9

100

0.504
  comM Vibrio campbellii strain DS40M4

50.202

100

0.502
  comM Glaesserella parasuis strain SC1401

49.8

100

0.502
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.047

100

0.47

Multiple sequence alignment