Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   HLB22_RS08225 Genome accession   NZ_CP053101
Coordinates   1715168..1716172 (-) Length   334 a.a.
NCBI ID   WP_001005767.1    Uniprot ID   Q6GG63
Organism   Staphylococcus aureus strain EDCC5398     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1710168..1721172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HLB22_RS08210 (HLB22_08210) yajC 1712700..1712960 (-) 261 WP_001160682.1 preprotein translocase subunit YajC -
  HLB22_RS08215 (HLB22_08215) tgt 1712979..1714118 (-) 1140 WP_170267432.1 tRNA guanosine(34) transglycosylase Tgt -
  HLB22_RS08220 (HLB22_08220) queA 1714141..1715166 (-) 1026 WP_001008435.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  HLB22_RS08225 (HLB22_08225) ruvB 1715168..1716172 (-) 1005 WP_001005767.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  HLB22_RS08230 (HLB22_08230) ruvA 1716204..1716821 (-) 618 WP_170267433.1 Holliday junction branch migration protein RuvA Machinery gene
  HLB22_RS08235 (HLB22_08235) - 1716835..1717290 (-) 456 WP_000368899.1 ACT domain-containing protein -
  HLB22_RS08240 (HLB22_08240) obgE 1717303..1718595 (-) 1293 WP_000496100.1 GTPase ObgE -
  HLB22_RS08245 (HLB22_08245) rpmA 1718815..1719099 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  HLB22_RS08250 (HLB22_08250) - 1719111..1719431 (-) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  HLB22_RS08255 (HLB22_08255) rplU 1719437..1719745 (-) 309 WP_000457386.1 50S ribosomal protein L21 -
  HLB22_RS08260 (HLB22_08260) mreD 1719981..1720511 (-) 531 WP_001259930.1 rod shape-determining protein MreD -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 37718.00 Da        Isoelectric Point: 5.0865

>NTDB_id=389914 HLB22_RS08225 WP_001005767.1 1715168..1716172(-) (ruvB) [Staphylococcus aureus strain EDCC5398]
MNERMVDQSMHSEETDFELSLRPTRLRQYIGQNSIKSNLEVFIKAAKLRHEPLDHVLLFGPPGLGKTTLSNIIANEMEVN
IRTVSGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSVVEEVLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATT
RAGSLTGPLRDRFGVHLRLEYYNESDLKEIIIRTAEVLGTGIDEESAIELAKRSRGTPRVANRLLKRVRDFQQVNEDEQI
YIETTKHALGLLQVDQHGLDYIDHKMMNCIIKQYNGGPVGLDTIAVTIGEERITIEDVYEPFLIQKGFLERTPRGRKATP
LAYEHFAKSNEERE

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=389914 HLB22_RS08225 WP_001005767.1 1715168..1716172(-) (ruvB) [Staphylococcus aureus strain EDCC5398]
ATGAATGAGCGTATGGTTGATCAATCAATGCATAGTGAAGAAACTGATTTCGAATTGTCGCTTAGACCTACGAGATTACG
ACAATATATTGGTCAAAATTCAATAAAAAGTAATTTAGAAGTATTTATTAAAGCGGCTAAACTTCGTCATGAACCATTAG
ATCATGTATTGCTTTTTGGCCCCCCTGGATTAGGTAAGACAACATTATCTAATATCATTGCCAATGAAATGGAAGTTAAT
ATACGTACAGTATCAGGGCCTTCATTAGAAAGACCTGGTGATTTGGCTGCAATTTTATCAGGACTTCAACCTGGAGATGT
TTTGTTTATTGATGAAATACACAGACTGAGTAGTGTTGTTGAAGAAGTGTTATACCCTGCAATGGAAGATTTCTTTTTAG
ATATTATCATTGGTAAAGGCGATGAGGCTAGAAGTATCCGTATCGACTTACCTCCATTCACTTTGGTAGGTGCAACAACG
CGAGCTGGCAGCTTAACAGGTCCACTAAGGGATCGATTTGGTGTGCACTTAAGATTAGAATATTATAATGAATCAGATTT
AAAAGAAATCATTATTAGAACAGCTGAGGTTTTAGGCACAGGTATTGATGAAGAAAGTGCCATTGAACTTGCTAAACGTT
CTAGAGGGACTCCAAGAGTAGCAAATCGACTATTGAAGCGGGTAAGAGACTTCCAGCAAGTGAATGAAGATGAACAAATA
TACATTGAAACAACGAAGCACGCATTAGGTTTACTTCAAGTTGATCAACACGGACTAGATTACATTGATCATAAAATGAT
GAACTGTATTATTAAGCAGTATAATGGTGGACCTGTTGGTTTAGATACGATTGCCGTAACAATTGGTGAAGAACGTATTA
CAATTGAGGACGTTTATGAGCCATTTCTTATTCAGAAAGGCTTTTTAGAACGTACGCCACGTGGCAGAAAAGCAACACCA
TTAGCTTATGAACATTTTGCAAAGTCGAATGAGGAGAGAGAATAA

Domains

Predicted by InterProScan.

RuvB AAA lid domain (AAA_lid_4)

(182-255)

RuvB C-terminal winged helix domain (WHD_RuvB)

(257-326)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(21-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q6GG63

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

65.951

97.605

0.644
  ruvB Streptococcus pneumoniae TIGR4

58.182

98.802

0.575
  ruvB Streptococcus pneumoniae R6

57.879

98.802

0.572
  ruvB Streptococcus pneumoniae D39

57.879

98.802

0.572
  ruvB Helicobacter pylori 26695

56.481

97.006

0.548
  ruvB Synechocystis sp. PCC 6803

53.75

95.808

0.515