Detailed information NTG0389915

Bioinformatically predicted

Overview

• Name: ruvA
• Type: Machinery gene
• Locus tag: HLB22_RS08230
• Genome accession: NZ_CP053101
• Coordinates: 1716204..1716821 (-)
• Length: 205 a.a.
• NCBI ID: WP_170267433.1
• Uniprot ID: -
• Organism: Staphylococcus aureus strain EDCC5398
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1711204..1721821

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HLB22_RS08210 (HLB22_08210)	yajC	1712700..1712960 (-)	261	WP_001160682.1	preprotein translocase subunit YajC	-
HLB22_RS08215 (HLB22_08215)	tgt	1712979..1714118 (-)	1140	WP_170267432.1	tRNA guanosine(34) transglycosylase Tgt	-
HLB22_RS08220 (HLB22_08220)	queA	1714141..1715166 (-)	1026	WP_001008435.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
HLB22_RS08225 (HLB22_08225)	ruvB	1715168..1716172 (-)	1005	WP_001005767.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
HLB22_RS08230 (HLB22_08230)	ruvA	1716204..1716821 (-)	618	WP_170267433.1	Holliday junction branch migration protein RuvA	Machinery gene
HLB22_RS08235 (HLB22_08235)	-	1716835..1717290 (-)	456	WP_000368899.1	ACT domain-containing protein	-
HLB22_RS08240 (HLB22_08240)	obgE	1717303..1718595 (-)	1293	WP_000496100.1	GTPase ObgE	-
HLB22_RS08245 (HLB22_08245)	rpmA	1718815..1719099 (-)	285	WP_000916187.1	50S ribosomal protein L27	-
HLB22_RS08250 (HLB22_08250)	-	1719111..1719431 (-)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
HLB22_RS08255 (HLB22_08255)	rplU	1719437..1719745 (-)	309	WP_000457386.1	50S ribosomal protein L21	-
HLB22_RS08260 (HLB22_08260)	mreD	1719981..1720511 (-)	531	WP_001259930.1	rod shape-determining protein MreD	-
HLB22_RS08265 (HLB22_08265)	mreC	1720511..1721353 (-)	843	WP_001670367.1	rod shape-determining protein MreC	-
HLB22_RS08270 (HLB22_08270)	-	1721553..1721672 (-)	120	WP_000840602.1	hypothetical protein	-

Sequence

Protein

• Length: 205 a.a.
• Molecular weight: 22871.11 Da
• Isoelectric Point: 5.3679

>NTDB_id=389915 HLB22_RS08230 WP_170267433.1 1716204..1716821(-) (ruvA) [Staphylococcus aureus strain EDCC5398]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKQLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQDQFV
QEAMLALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide

• Length: 618 bp

>NTDB_id=389915 HLB22_RS08230 WP_170267433.1 1716204..1716821(-) (ruvA) [Staphylococcus aureus strain EDCC5398]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCAACTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATCA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACTTCGACGGTGCAAGATCAATTCGTGCAAGATCAATTCGTG
CAAGAAGCAATGTTAGCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAA
TAAATATGACTCAGTTGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

• RuvA N terminal domain (RuvA_N) (1-61)

• Helix-hairpin-helix domain (HHH_5) (71-128)

• RuvA, C-terminal domain (RuvA_C) (161-202)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvA	Streptococcus pneumoniae TIGR4	45.588	99.512	0.454
ruvA	Streptococcus pneumoniae R6	45.098	99.512	0.449
ruvA	Streptococcus pneumoniae D39	45.098	99.512	0.449
ruvA	Bacillus subtilis subsp. subtilis str. 168	42.079	98.537	0.415