Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   FR932_RS18105 Genome accession   NZ_CP044399
Coordinates   4028715..4030232 (-) Length   505 a.a.
NCBI ID   WP_019442438.1    Uniprot ID   -
Organism   Moritella marina ATCC 15381 strain MP-1     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4023715..4035232
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FR932_RS18085 (FR932_18090) - 4024231..4024857 (+) 627 WP_019442442.1 thiol:disulfide interchange protein DsbA/DsbL -
  FR932_RS18090 (FR932_18095) - 4024950..4026611 (-) 1662 WP_019442441.1 AMP-binding protein -
  FR932_RS18095 (FR932_18100) - 4026842..4027744 (-) 903 WP_019442440.1 acyltransferase -
  FR932_RS18100 (FR932_18105) - 4027737..4028639 (-) 903 WP_019442439.1 acyltransferase -
  FR932_RS18105 (FR932_18110) comM 4028715..4030232 (-) 1518 WP_019442438.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  FR932_RS18110 (FR932_18115) ilvG 4030732..4032390 (+) 1659 WP_019442437.1 acetolactate synthase 2 catalytic subunit -
  FR932_RS18115 (FR932_18120) ilvM 4032380..4032631 (+) 252 WP_019442436.1 acetolactate synthase 2 small subunit -
  FR932_RS18120 (FR932_18125) - 4032646..4033575 (+) 930 WP_019442435.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 505 a.a.        Molecular weight: 55001.84 Da        Isoelectric Point: 7.8739

>NTDB_id=389756 FR932_RS18105 WP_019442438.1 4028715..4030232(-) (comM) [Moritella marina ATCC 15381 strain MP-1]
MNLAVIYSRAILGINAPLITIEVHISEGLPGFTIVGLPETSVKEAKDRVRSALMNSNFVMPAKRITVNLGPADLPKEGSR
YDLPIAIAILIASQQVIASQHQQLEFVGELSLSGKLRACRGTIPSIIACKKAGRSSIIPFDNGHEAALIDNANCFTATNL
QEVCQHLNAEQTLPTAKRITSPLGSEDNQQDMQDIIGQQSAKRALEICAAGSHNLLLFGPPGTGKTMLASRLTSIQPDMT
EQEALECAAIKSISGNDFVAQDWCRRPFRTPHHTSSAVALVGGGRNPRPGEITLAHNGVLFLDELPEYQRKALDSLREPL
EAGRISISRANQQVDFPARFQLIGALNPSPSGYYDNNKFGGNSSQVAKYLSKLSGPFLDRFDLTIEVPALPKGSLTEQGQ
RGESSDAIKQRVSAAQAIQRQRGNKLNDALTNKEIELHCSLQHQDAVFLELAIDKMGLSTRAFHKIIKVARTIADLNNCI
DINKSHLLEALSYRAMDRLLQQINV

Nucleotide


Download         Length: 1518 bp        

>NTDB_id=389756 FR932_RS18105 WP_019442438.1 4028715..4030232(-) (comM) [Moritella marina ATCC 15381 strain MP-1]
ATGAATTTAGCCGTGATCTATAGCCGTGCAATTTTAGGTATCAATGCCCCCCTAATTACTATTGAAGTGCATATCAGCGA
AGGACTGCCCGGGTTTACGATAGTCGGTTTGCCTGAAACATCAGTCAAAGAGGCAAAAGATCGGGTTCGCAGTGCGTTAA
TGAATTCTAACTTTGTGATGCCAGCCAAACGTATCACAGTCAATTTGGGACCTGCCGATCTGCCCAAAGAAGGCAGCCGT
TATGACTTACCCATTGCGATCGCGATTTTAATTGCTTCACAACAAGTGATCGCCAGCCAGCATCAGCAGCTAGAGTTTGT
CGGTGAATTATCACTGTCCGGTAAACTACGCGCCTGCCGCGGTACGATCCCCAGTATCATAGCTTGCAAGAAAGCCGGTC
GCAGCAGTATCATTCCATTCGATAATGGCCATGAAGCAGCGCTTATCGACAATGCCAATTGTTTTACTGCCACAAATTTA
CAAGAAGTATGTCAGCACCTCAATGCGGAGCAGACTCTTCCCACCGCTAAACGGATAACCTCACCGCTAGGTAGTGAGGA
TAACCAACAAGACATGCAAGATATTATCGGCCAACAAAGTGCCAAGCGCGCCTTAGAGATCTGTGCGGCAGGCAGTCATA
ACTTACTATTATTTGGCCCTCCCGGCACAGGTAAAACCATGTTGGCGAGTCGCTTAACCAGCATTCAACCTGACATGACT
GAGCAAGAAGCATTAGAGTGCGCAGCGATTAAATCCATTAGTGGTAACGACTTTGTCGCTCAAGATTGGTGCCGCCGACC
TTTTCGCACTCCGCACCACACTTCATCAGCTGTCGCTTTAGTTGGCGGAGGTCGTAACCCGCGACCCGGTGAAATAACCC
TTGCGCATAACGGCGTATTATTTTTGGACGAGCTCCCGGAATATCAACGCAAAGCGCTCGATTCATTACGTGAACCCTTA
GAAGCAGGGAGGATCAGTATTTCCAGAGCTAATCAACAAGTTGACTTTCCCGCTCGATTTCAATTAATTGGCGCTCTCAA
TCCCTCGCCTTCCGGTTATTATGACAATAATAAATTCGGCGGTAATAGTAGCCAAGTAGCAAAATACTTAAGTAAATTAT
CAGGGCCATTTTTAGATCGTTTCGATCTCACCATTGAGGTACCCGCATTACCAAAAGGTAGTTTAACCGAACAAGGGCAA
CGTGGTGAAAGCAGCGATGCCATTAAACAAAGAGTCAGTGCTGCACAAGCGATACAACGTCAACGAGGTAATAAATTAAA
TGACGCACTCACCAATAAAGAAATTGAATTACATTGCTCGCTACAACATCAAGATGCGGTATTTTTAGAACTCGCGATAG
ATAAAATGGGCCTATCAACACGCGCCTTCCACAAGATAATTAAGGTCGCCCGCACTATCGCAGATTTAAACAATTGTATA
GATATCAATAAATCACATTTGCTGGAAGCACTCTCCTACCGTGCAATGGATCGGCTATTACAGCAAATTAATGTTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

57.594

100

0.578
  comM Vibrio campbellii strain DS40M4

56.863

100

0.574
  comM Glaesserella parasuis strain SC1401

56.863

100

0.574
  comM Vibrio cholerae strain A1552

57.03

100

0.57
  comM Legionella pneumophila str. Paris

47.61

99.406

0.473
  comM Legionella pneumophila strain ERS1305867

47.61

99.406

0.473
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.031

100

0.446

Multiple sequence alignment