Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   NMBH4476_RS07235 Genome accession   NC_017516
Coordinates   1388673..1389146 (-) Length   157 a.a.
NCBI ID   WP_002225356.1    Uniprot ID   -
Organism   Neisseria meningitidis H44/76     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1383673..1394146
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMBH4476_RS07210 (NMBH4476_1279) yaaA 1383881..1384660 (-) 780 WP_002225351.1 peroxide stress protein YaaA -
  NMBH4476_RS15850 - 1384709..1384834 (-) 126 Protein_1324 IS5/IS1182 family transposase -
  NMBH4476_RS07215 (NMBH4476_1280) dapC 1384923..1386110 (-) 1188 WP_002225352.1 succinyldiaminopimelate transaminase -
  NMBH4476_RS07220 (NMBH4476_1281) dut 1386188..1386640 (-) 453 WP_002225353.1 dUTP diphosphatase -
  NMBH4476_RS07225 (NMBH4476_1282) - 1386840..1387208 (+) 369 Protein_1327 AzlC family ABC transporter permease -
  NMBH4476_RS07235 (NMBH4476_1283) pilX 1388673..1389146 (-) 474 WP_002225356.1 PilX family type IV pilin Machinery gene
  NMBH4476_RS07240 (NMBH4476_1284) pilK 1389151..1389744 (-) 594 WP_002244085.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  NMBH4476_RS07245 (NMBH4476_1285) pilJ 1389723..1390664 (-) 942 WP_033911581.1 PilW family protein Machinery gene
  NMBH4476_RS07250 (NMBH4476_1286) pilV 1390661..1391281 (-) 621 WP_002225360.1 type IV pilus modification protein PilV Regulator
  NMBH4476_RS07255 (NMBH4476_1287) pilH 1391305..1391973 (-) 669 WP_002230433.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  NMBH4476_RS07260 (NMBH4476_1288) dnaB 1392282..1393688 (-) 1407 WP_002225362.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17521.30 Da        Isoelectric Point: 9.4258

>NTDB_id=38973 NMBH4476_RS07235 WP_002225356.1 1388673..1389146(-) (pilX) [Neisseria meningitidis H44/76]
MEQKGFTLIEMMIVVAILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNISKQFILKNPLDDNQTIENKLEIFVSGYKM
NPKIAKKYSVSVKFVDKEKSRAYRLVGVPKAGTGYTLSVWMNSVGDGYKCRDAASAQAHLETLSSDVGCEAFSNRKK

Nucleotide


Download         Length: 474 bp        

>NTDB_id=38973 NMBH4476_RS07235 WP_002225356.1 1388673..1389146(-) (pilX) [Neisseria meningitidis H44/76]
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTCGTCGCGATACTCGGCATTATCAGCGTCATTGCCATACC
TTCTTATCAAAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATATTTCCAAAC
AGTTTATTTTGAAAAATCCCCTGGACGATAATCAGACCATCGAGAACAAACTGGAAATATTTGTCTCAGGCTATAAGATG
AATCCGAAAATTGCCAAAAAATATAGTGTTTCGGTAAAGTTTGTCGATAAGGAAAAATCAAGGGCATACAGGTTGGTCGG
CGTTCCGAAGGCGGGGACGGGTTATACTTTGTCGGTATGGATGAACAGCGTGGGCGACGGATACAAATGCCGTGATGCCG
CTTCTGCCCAAGCCCATTTGGAGACCTTGTCCTCAGATGTCGGCTGTGAAGCCTTCTCTAATCGTAAAAAATAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-25)

Minor type IV pilin, PilX (Pilin_PilX)

(31-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Neisseria meningitidis 8013

92.994

100

0.93
  pilL Neisseria gonorrhoeae MS11

88.535

100

0.885

Multiple sequence alignment