Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   NMBH4476_RS07245 Genome accession   NC_017516
Coordinates   1389723..1390664 (-) Length   313 a.a.
NCBI ID   WP_033911581.1    Uniprot ID   -
Organism   Neisseria meningitidis H44/76     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1384723..1395664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMBH4476_RS07215 (NMBH4476_1280) dapC 1384923..1386110 (-) 1188 WP_002225352.1 succinyldiaminopimelate transaminase -
  NMBH4476_RS07220 (NMBH4476_1281) dut 1386188..1386640 (-) 453 WP_002225353.1 dUTP diphosphatase -
  NMBH4476_RS07225 (NMBH4476_1282) - 1386840..1387208 (+) 369 Protein_1327 AzlC family ABC transporter permease -
  NMBH4476_RS07235 (NMBH4476_1283) pilX 1388673..1389146 (-) 474 WP_002225356.1 PilX family type IV pilin Machinery gene
  NMBH4476_RS07240 (NMBH4476_1284) pilK 1389151..1389744 (-) 594 WP_002244085.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  NMBH4476_RS07245 (NMBH4476_1285) pilJ 1389723..1390664 (-) 942 WP_033911581.1 PilW family protein Machinery gene
  NMBH4476_RS07250 (NMBH4476_1286) pilV 1390661..1391281 (-) 621 WP_002225360.1 type IV pilus modification protein PilV Regulator
  NMBH4476_RS07255 (NMBH4476_1287) pilH 1391305..1391973 (-) 669 WP_002230433.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  NMBH4476_RS07260 (NMBH4476_1288) dnaB 1392282..1393688 (-) 1407 WP_002225362.1 replicative DNA helicase -
  NMBH4476_RS07265 (NMBH4476_1289) - 1393852..1394439 (+) 588 WP_002220670.1 superoxide dismutase -
  NMBH4476_RS07270 (NMBH4476_1290) - 1394956..1395465 (-) 510 WP_002213852.1 isoprenylcysteine carboxyl methyltransferase family protein -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 34376.00 Da        Isoelectric Point: 8.1075

>NTDB_id=38975 NMBH4476_RS07245 WP_033911581.1 1389723..1390664(-) (pilJ) [Neisseria meningitidis H44/76]
MRRKMLNVPKGSYDGMKGFTIIEFLVAGLLSMIVLMAVGSSYFTSRKLNDAANERLAAQQDLRNAATLIVRDARMAGGFG
CFNMSEHPATDVIPDTTQQNSPFSLKRNGIDKLIPIAESSNINYQNFFQVGSALIFQYGIDDVNASTATTVVSSCAAISK
PGKQIPTLEDAKKELKILDQDKEQNGNIARQRHVVNAYAVGRIADEEGLFRFQLDDKGKWGNPQLLVKKVRHMKVRYIYV
SGCPEDDDAGKEETFKYTDKFDSAQNAVTPAGVEVLLSSGTDTKIAASSDNHIYAYRIDATIRGGNVCANRTL

Nucleotide


Download         Length: 942 bp        

>NTDB_id=38975 NMBH4476_RS07245 WP_033911581.1 1389723..1390664(-) (pilJ) [Neisseria meningitidis H44/76]
ATGAGACGTAAAATGCTAAACGTACCAAAAGGCAGTTATGATGGTATGAAAGGTTTTACCATTATTGAATTTTTGGTTGC
GGGCCTGCTCAGTATGATTGTCCTGATGGCGGTCGGATCGAGTTACTTCACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCCGCGCAACAGGATTTGCGGAATGCGGCAACATTGATTGTCCGCGATGCGAGAATGGCAGGCGGCTTCGGT
TGTTTCAATATGTCCGAGCATCCTGCAACTGATGTTATTCCCGATACGACGCAACAAAATTCTCCTTTTTCCTTAAAAAG
GAACGGTATAGATAAACTTATTCCCATAGCGGAATCTTCAAATATCAATTATCAGAATTTTTTCCAGGTTGGTAGCGCAT
TGATTTTTCAATACGGAATCGATGATGTTAATGCAAGCACCGCGACTACCGTCGTCAGCAGCTGTGCCGCAATATCGAAA
CCGGGCAAGCAAATCCCTACTTTAGAAGATGCAAAAAAAGAATTGAAGATTCTGGATCAGGATAAGGAGCAAAATGGCAA
TATAGCGCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCAGGATTGCCGATGAGGAAGGTTTGTTCCGCTTCCAAT
TGGATGATAAGGGCAAGTGGGGTAATCCTCAGTTGCTCGTGAAAAAGGTTAGACATATGAAAGTGCGGTATATCTATGTT
TCCGGCTGTCCTGAAGATGACGATGCCGGCAAAGAGGAAACATTCAAATATACGGATAAATTCGACAGCGCCCAAAATGC
TGTTACGCCCGCCGGGGTGGAGGTTTTATTGAGTAGCGGTACTGATACCAAGATTGCCGCTTCTTCAGACAATCATATTT
ATGCTTACCGTATCGATGCGACAATACGCGGGGGAAATGTATGCGCAAACAGAACACTTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

83.544

100

0.843

Multiple sequence alignment