Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LDBND_RS00040 Genome accession   NC_014727
Coordinates   9357..9935 (+) Length   192 a.a.
NCBI ID   WP_003616385.1    Uniprot ID   A0A2I1SID3
Organism   Lactobacillus delbrueckii subsp. bulgaricus ND02     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4357..14935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDBND_RS00025 (LDBND_0005) gyrB 4362..6323 (+) 1962 WP_013438863.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  LDBND_RS00030 (LDBND_0006) gyrA 6336..8807 (+) 2472 WP_013438864.1 DNA gyrase subunit A -
  LDBND_RS00035 (LDBND_0007) rpsF 9023..9316 (+) 294 WP_003612647.1 30S ribosomal protein S6 -
  LDBND_RS00040 (LDBND_0008) ssb 9357..9935 (+) 579 WP_003616385.1 single-stranded DNA-binding protein Machinery gene
  LDBND_RS00045 (LDBND_0009) rpsR 9962..10198 (+) 237 WP_002879432.1 30S ribosomal protein S18 -
  LDBND_RS00050 (LDBND_0010) - 10339..12360 (+) 2022 WP_002879433.1 DHH family phosphoesterase -
  LDBND_RS00055 (LDBND_0011) rplI 12383..12838 (+) 456 WP_013438865.1 50S ribosomal protein L9 -
  LDBND_RS00060 (LDBND_0012) dnaB 12862..14232 (+) 1371 WP_013438866.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 20667.31 Da        Isoelectric Point: 4.5431

>NTDB_id=38974 LDBND_RS00040 WP_003616385.1 9357..9935(+) (ssb) [Lactobacillus delbrueckii subsp. bulgaricus ND02]
MINNVVLVGRLTRDPELRTTGSGISVATFTLAVDRQFTNASGQREADFISCVIWRKAAENFCNFTSKGSLVGIQGRIQTR
NYDNKDGQRVYVTEVLVDNFSLLESRRERESRQQNGGFGGQGQSQNTGFNTGFGGGSGYANDNAFGSPAQSNGPANAGFN
EDNKKDAGGDTNTNPFDSSDDAINVSNDDLPF

Nucleotide


Download         Length: 579 bp        

>NTDB_id=38974 LDBND_RS00040 WP_003616385.1 9357..9935(+) (ssb) [Lactobacillus delbrueckii subsp. bulgaricus ND02]
ATGATCAATAACGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGAATTACGTACTACTGGGAGCGGCATCTCGGTTGC
TACGTTCACTTTGGCCGTTGACCGGCAGTTTACCAATGCATCAGGCCAGAGAGAAGCGGACTTCATCAGCTGCGTGATTT
GGCGAAAGGCTGCTGAGAACTTCTGCAACTTCACCAGCAAGGGCAGTTTGGTGGGCATCCAGGGCCGAATCCAGACCAGA
AACTATGATAACAAGGACGGCCAGCGAGTTTACGTGACAGAAGTCCTCGTGGACAACTTCTCACTGCTCGAATCACGCCG
CGAGCGTGAAAGCCGTCAGCAAAACGGCGGATTTGGCGGCCAAGGTCAAAGCCAAAACACCGGCTTCAACACCGGATTTG
GCGGCGGCAGCGGCTACGCCAACGACAACGCCTTCGGCAGCCCGGCCCAGTCAAACGGGCCAGCTAATGCCGGATTCAAT
GAAGATAACAAGAAAGATGCCGGCGGAGACACGAACACCAACCCGTTCGACAGCTCTGACGATGCAATCAACGTCTCAAA
TGACGATCTTCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2I1SID3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.031

100

0.583
  ssbA Bacillus subtilis subsp. subtilis str. 168

47.396

100

0.474

Multiple sequence alignment