Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RBRH_RS11330 Genome accession   NC_014722
Coordinates   2561463..2562995 (+) Length   510 a.a.
NCBI ID   WP_041753885.1    Uniprot ID   -
Organism   Mycetohabitans rhizoxinica HKI 454     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2556463..2567995
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBRH_RS11305 (RBRH_02205) gshA 2557242..2558531 (-) 1290 WP_013436416.1 glutamate--cysteine ligase -
  RBRH_RS11310 (RBRH_02206) - 2558851..2560353 (-) 1503 WP_041753884.1 ammonium transporter -
  RBRH_RS11315 (RBRH_02207) glnK 2560425..2560763 (-) 339 WP_013436418.1 P-II family nitrogen regulator -
  RBRH_RS11325 (RBRH_02209) - 2561151..2561408 (+) 258 WP_041754527.1 accessory factor UbiK family protein -
  RBRH_RS11330 (RBRH_02210) comM 2561463..2562995 (+) 1533 WP_041753885.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RBRH_RS11335 (RBRH_02211) - 2563428..2563988 (-) 561 WP_232509295.1 hypothetical protein -
  RBRH_RS11340 (RBRH_02212) - 2564173..2564688 (+) 516 WP_041754530.1 TlpA disulfide reductase family protein -
  RBRH_RS11345 (RBRH_02213) lipA 2564918..2565934 (-) 1017 WP_041754532.1 lipoyl synthase -
  RBRH_RS11350 lipB 2565969..2566671 (-) 703 Protein_2291 lipoyl(octanoyl) transferase LipB -
  RBRH_RS11355 (RBRH_02215) - 2566770..2567096 (-) 327 WP_041753886.1 DUF2917 domain-containing protein -

Sequence

Protein


Download         Length: 510 a.a.        Molecular weight: 53780.98 Da        Isoelectric Point: 8.0703

>NTDB_id=38972 RBRH_RS11330 WP_041753885.1 2561463..2562995(+) (comM) [Mycetohabitans rhizoxinica HKI 454]
MSLAVVRSRAPLHALAPEVTVEVHLANGLPSFAIVGLPDLEVRESRERVRAALAHCGFDVPVRRITVNLAPADLPKESGR
FDLPIALGILAASGQLPGDALTGREFAGELSLSGALRPVRGAFAMACGTARQAGPGAACPELYVPLDNAAEAALAPGVAV
FGAADLAALVAHLKGEPEARIKRAQPCGVAVPAQRAPDMADIIGQPAARRALEIAAAGSHHMLMVGPPGAGKSMLAQRLP
GILPPMSDDDALACAMLLSASGRGFTAADWGRRPFRAPHHSASAAALVGGYNPPRPGEITLAHLGVLFLDELPEFSRAVL
ETLREPLETGRITISRAATQTDFPATCQLVAAMNPCPCGLRGDPLGRCRCTPGQIARYVGRLSGPLLDRIDIVIDVPSLS
AAELARRTGTRGEASYAVAARVRHARERQLARQHKANCALNAEDLHRWCPLDPHSEALLQTCGERLGWSGRAFDKVRRVA
RTIADLDLSDDVLAVHVGEAVQYRRASIMV

Nucleotide


Download         Length: 1533 bp        

>NTDB_id=38972 RBRH_RS11330 WP_041753885.1 2561463..2562995(+) (comM) [Mycetohabitans rhizoxinica HKI 454]
ATGTCGCTAGCCGTGGTCCGCAGCCGCGCGCCGTTGCACGCGCTCGCGCCCGAAGTCACTGTTGAAGTCCATTTGGCAAA
CGGCCTGCCGTCGTTTGCGATCGTCGGGTTGCCTGACCTGGAAGTGCGTGAGAGCCGTGAGCGGGTTCGGGCTGCCTTGG
CGCATTGCGGTTTCGACGTGCCCGTGCGGCGAATCACCGTCAACCTGGCCCCGGCAGACTTGCCGAAGGAATCCGGACGC
TTCGATTTGCCGATTGCACTGGGCATCCTGGCCGCGAGCGGGCAATTGCCGGGCGATGCACTGACCGGCCGCGAGTTCGC
CGGCGAATTGTCGCTCAGCGGCGCGCTGCGGCCGGTCCGGGGCGCGTTCGCGATGGCGTGCGGCACCGCGAGACAGGCTG
GCCCCGGCGCAGCGTGCCCGGAACTGTACGTGCCGTTGGACAATGCGGCGGAAGCCGCGCTAGCGCCAGGCGTGGCCGTA
TTTGGGGCCGCCGACTTGGCCGCGCTCGTCGCGCATCTGAAGGGCGAGCCCGAGGCGCGCATCAAGCGCGCGCAGCCGTG
CGGCGTCGCCGTGCCCGCGCAACGCGCACCGGATATGGCCGATATAATCGGCCAACCTGCCGCGCGCCGGGCGCTGGAGA
TCGCCGCCGCCGGCTCGCATCACATGCTGATGGTGGGACCGCCTGGCGCCGGCAAATCGATGCTGGCGCAACGCCTGCCG
GGCATACTGCCACCGATGTCGGACGACGACGCGCTGGCCTGTGCGATGCTGCTATCTGCCAGCGGCCGCGGCTTCACGGC
GGCAGACTGGGGGCGCCGTCCATTTCGCGCGCCGCATCACAGCGCGAGCGCCGCCGCGTTGGTCGGCGGCTACAACCCGC
CGCGCCCCGGCGAAATTACGCTGGCGCACCTGGGCGTACTGTTCCTCGATGAACTGCCCGAGTTTAGCCGAGCGGTGCTG
GAGACCCTTCGCGAGCCGCTCGAAACTGGCAGGATCACGATTTCTCGAGCTGCGACACAAACCGACTTTCCCGCCACATG
TCAACTGGTGGCCGCGATGAACCCGTGCCCTTGTGGCTTGCGTGGCGATCCACTAGGGCGGTGCCGGTGCACGCCCGGCC
AGATCGCCCGCTATGTCGGCAGGCTGTCCGGGCCACTGCTCGACCGGATCGACATCGTTATCGACGTGCCTTCGCTGTCG
GCCGCCGAACTCGCCCGCCGCACCGGCACGCGCGGCGAAGCGAGCTACGCGGTCGCGGCGCGTGTGCGGCACGCGCGCGA
ACGTCAATTAGCACGCCAGCATAAGGCCAATTGCGCGTTGAATGCCGAGGACCTCCATCGCTGGTGTCCGCTCGATCCAC
ACAGCGAAGCGTTACTGCAGACCTGCGGCGAGCGCCTGGGGTGGTCGGGGCGTGCCTTCGACAAGGTGCGCCGCGTTGCG
CGCACCATCGCCGACCTTGATCTAAGCGATGACGTGCTCGCTGTCCACGTCGGCGAGGCGGTGCAATACCGGCGCGCGTC
GATCATGGTCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-504)

Subunit ChlI of Mg-chelatase (ChlI)

(21-133)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(198-403)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

49.802

98.824

0.492
  comM Vibrio campbellii strain DS40M4

48.413

98.824

0.478
  comM Haemophilus influenzae Rd KW20

47.826

99.216

0.475
  comM Glaesserella parasuis strain SC1401

47.047

99.608

0.469
  comM Legionella pneumophila str. Paris

45.652

99.216

0.453
  comM Legionella pneumophila strain ERS1305867

45.652

99.216

0.453
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

40.882

97.843

0.4

Multiple sequence alignment