Detailed information NTG0389713

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HKW69_RS06730
• Genome accession: NZ_CP053080
• Coordinates: 1390915..1391907 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain HB37
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1385915..1396907

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HKW69_RS06700 (HKW69_06710)	ispD	1385976..1386686 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
HKW69_RS06705 (HKW69_06715)	ispF	1386686..1387165 (+)	480	WP_001219252.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HKW69_RS06710 (HKW69_06720)	truD	1387162..1388211 (+)	1050	WP_000568931.1	tRNA pseudouridine(13) synthase TruD	-
HKW69_RS06715 (HKW69_06725)	surE	1388192..1388953 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
HKW69_RS06720 (HKW69_06730)	pcm	1388947..1389573 (+)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
HKW69_RS06725 (HKW69_06735)	nlpD	1389758..1390852 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
HKW69_RS06730 (HKW69_06740)	rpoS	1390915..1391907 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
HKW69_RS06735 (HKW69_06745)	-	1392085..1392636 (-)	552	WP_001179442.1	flavodoxin family protein	-
HKW69_RS06740 (HKW69_06750)	-	1392861..1393904 (+)	1044	WP_001161578.1	MBL fold metallo-hydrolase	-
HKW69_RS06745 (HKW69_06755)	ygbN	1394047..1395411 (-)	1365	WP_000104433.1	GntP family transporter	-
HKW69_RS06750 (HKW69_06760)	ygbM	1395499..1396275 (-)	777	WP_001136928.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=389713 HKW69_RS06730 WP_000081550.1 1390915..1391907(+) (rpoS) [Escherichia coli strain HB37]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=389713 HKW69_RS06730 WP_000081550.1 1390915..1391907(+) (rpoS) [Escherichia coli strain HB37]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGTTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715