Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   D6T76_RS12420 Genome accession   NZ_CP044335
Coordinates   2643841..2644371 (-) Length   176 a.a.
NCBI ID   WP_169723380.1    Uniprot ID   -
Organism   Enterobacter hormaechei strain AKB48     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2638841..2649371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D6T76_RS12395 (D6T76_12545) soxR 2638931..2639389 (-) 459 WP_003860275.1 redox-sensitive transcriptional activator SoxR -
  D6T76_RS12400 (D6T76_12550) soxS 2639488..2639814 (+) 327 WP_003860277.1 superoxide response transcriptional regulator SoxS -
  D6T76_RS12405 (D6T76_12555) - 2639821..2641386 (-) 1566 WP_169723377.1 EAL domain-containing protein -
  D6T76_RS12410 (D6T76_12560) - 2641652..2643052 (-) 1401 WP_169723378.1 sensor domain-containing diguanylate cyclase -
  D6T76_RS12415 (D6T76_12565) - 2643496..2643777 (+) 282 WP_169723379.1 YjcB family protein -
  D6T76_RS12420 (D6T76_12570) ssb 2643841..2644371 (-) 531 WP_169723380.1 single-stranded DNA-binding protein SSB1 Machinery gene
  D6T76_RS12425 (D6T76_12575) uvrA 2644623..2647445 (+) 2823 WP_169723381.1 excinuclease ABC subunit UvrA -
  D6T76_RS12430 (D6T76_12580) - 2647449..2647802 (-) 354 WP_169723382.1 MmcQ/YjbR family DNA-binding protein -
  D6T76_RS12435 (D6T76_12585) - 2647805..2648221 (-) 417 WP_017382627.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  D6T76_RS12440 (D6T76_12590) aphA 2648334..2649047 (-) 714 WP_063931912.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18863.90 Da        Isoelectric Point: 5.9207

>NTDB_id=389491 D6T76_RS12420 WP_169723380.1 2643841..2644371(-) (ssb) [Enterobacter hormaechei strain AKB48]
MASRGVNKVILVGNLGRDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQNQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAP
APSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=389491 D6T76_RS12420 WP_169723380.1 2643841..2644371(-) (ssb) [Enterobacter hormaechei strain AKB48]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCGGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGAGAAATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCCGAAGTGGCCGGTGAGTATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGACCAATCCGGCGCTGAGAAGTACACCACGGAAGTGGTGGTGAACGTGGG
CGGCACCATGCAAATGCTGGGTGGCCGTCAGGGCGGTGGCGCACCGGCAGGTGGCGGTCAGAATCAGCAGCAGGGTGGTT
GGGGTCAGCCTCAGCAGCCTCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCCCGTCCGCAGCAGCAGTCTGCTCCG
GCACCGTCTAACGAACCGCCAATGGATTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.111

100

0.778
  ssb Glaesserella parasuis strain SC1401

56.216

100

0.591
  ssb Neisseria meningitidis MC58

47.191

100

0.477
  ssb Neisseria gonorrhoeae MS11

47.191

100

0.477
  ssbA Bacillus subtilis subsp. subtilis str. 168

35.556

100

0.364

Multiple sequence alignment