Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   F7D14_RS18540 Genome accession   NZ_CP044331
Coordinates   3868234..3868755 (+) Length   173 a.a.
NCBI ID   WP_016921516.1    Uniprot ID   A0A6B8M9D2
Organism   Methylocystis parvus strain BRCS2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3863234..3873755
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F7D14_RS22675 (F7D14_18495) - 3865632..3865895 (+) 264 WP_016921520.1 FitA-like ribbon-helix-helix domain-containing protein -
  F7D14_RS18525 (F7D14_18500) - 3865892..3866314 (+) 423 WP_016921519.1 type II toxin-antitoxin system VapC family toxin -
  F7D14_RS18530 (F7D14_18505) dctA 3866393..3867652 (+) 1260 WP_016921518.1 C4-dicarboxylate transporter DctA -
  F7D14_RS18535 (F7D14_18510) - 3867683..3868072 (+) 390 WP_016921517.1 VOC family protein -
  F7D14_RS18540 (F7D14_18515) ssb 3868234..3868755 (+) 522 WP_016921516.1 single-stranded DNA-binding protein Machinery gene
  F7D14_RS18545 (F7D14_18520) - 3869143..3869784 (+) 642 WP_016921514.1 TadE/TadG family type IV pilus assembly protein -
  F7D14_RS18550 (F7D14_18525) - 3869810..3870448 (+) 639 WP_016921513.1 TadE/TadG family type IV pilus assembly protein -
  F7D14_RS18555 (F7D14_18530) - 3870458..3871930 (+) 1473 WP_016921512.1 pilus assembly protein TadG-related protein -
  F7D14_RS18560 (F7D14_18535) - 3872072..3872305 (+) 234 WP_016921511.1 hypothetical protein -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18699.64 Da        Isoelectric Point: 6.9901

>NTDB_id=389464 F7D14_RS18540 WP_016921516.1 3868234..3868755(+) (ssb) [Methylocystis parvus strain BRCS2]
MAGSVNKVILVGNLGRDPEVRTFPSGDRVVSFSVATSDTWRDKATGERRERTEWHNVSVFNEALGKIAEQYCRKGAKIYL
EGQLQTREYTDKDGNQRKATDVVIPRFRGELTLLDSKGGGRGEGAYEGGGYQSGGAGSFGRSSPMERAPAERGPAPAASG
GRLSDQLDDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=389464 F7D14_RS18540 WP_016921516.1 3868234..3868755(+) (ssb) [Methylocystis parvus strain BRCS2]
ATGGCGGGTAGCGTCAACAAGGTCATTCTGGTCGGCAATCTGGGCCGCGATCCGGAAGTGCGGACCTTTCCGTCGGGCGA
CCGCGTCGTCTCCTTCTCCGTCGCGACCTCGGATACGTGGCGCGACAAGGCTACGGGCGAGCGTCGCGAGCGCACGGAAT
GGCACAATGTCTCGGTCTTCAACGAGGCGCTAGGCAAGATCGCGGAGCAATATTGCCGCAAGGGCGCGAAGATCTATCTC
GAGGGGCAGCTTCAGACCCGCGAATATACTGACAAGGACGGCAATCAGCGCAAGGCGACCGATGTCGTCATCCCGCGCTT
TCGCGGCGAGCTGACCCTGCTCGACAGCAAGGGCGGCGGCCGCGGCGAAGGGGCTTACGAAGGCGGCGGCTATCAGAGCG
GCGGCGCCGGCTCATTCGGCCGCTCCTCGCCCATGGAGCGCGCGCCGGCCGAACGTGGCCCCGCCCCGGCCGCGAGCGGC
GGCCGTCTGTCGGATCAGCTCGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6B8M9D2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

44.737

100

0.491
  ssb Neisseria meningitidis MC58

45.902

100

0.486
  ssb Neisseria gonorrhoeae MS11

45.355

100

0.48
  ssb Vibrio cholerae strain A1552

43.407

100

0.457

Multiple sequence alignment