Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   LPB220_RS04160 Genome accession   NZ_CP044230
Coordinates   778564..779514 (+) Length   316 a.a.
NCBI ID   WP_150905723.1    Uniprot ID   A0A5J6LLQ9
Organism   Streptococcus sp. LPB0220     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 773564..784514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB220_RS04140 (LPB220_04140) - 774262..774969 (+) 708 WP_049486416.1 glucosamine-6-phosphate deaminase -
  LPB220_RS04145 (LPB220_04145) - 775158..776504 (+) 1347 WP_150905717.1 DUF1958 domain-containing protein -
  LPB220_RS04150 (LPB220_04150) - 776575..777747 (+) 1173 WP_150905720.1 MFS transporter -
  LPB220_RS04155 (LPB220_04155) - 777915..778490 (+) 576 WP_150905721.1 hypothetical protein -
  LPB220_RS04160 (LPB220_04160) coiA 778564..779514 (+) 951 WP_150905723.1 competence protein CoiA Machinery gene
  LPB220_RS04165 (LPB220_04165) pepF 779781..781583 (+) 1803 WP_031573459.1 oligoendopeptidase F Regulator
  LPB220_RS04170 (LPB220_04170) - 781585..782304 (+) 720 WP_150905725.1 O-methyltransferase -
  LPB220_RS04175 (LPB220_04175) prsA 782377..783321 (+) 945 WP_150905727.1 peptidylprolyl isomerase PrsA -
  LPB220_RS04180 (LPB220_04180) - 783575..784060 (+) 486 WP_150905729.1 LURP-one-related/scramblase family protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 37786.38 Da        Isoelectric Point: 6.9574

>NTDB_id=388990 LPB220_RS04160 WP_150905723.1 778564..779514(+) (coiA) [Streptococcus sp. LPB0220]
MFIAMDNNQKRWNCMEEIPAVTEGPFYCLACHSPVRLKNGSVLRAHFAHVELQHCPYHHEAESFEHLELKASLYDWASKE
SKTEVESYLADFQQIADLLVVDKNLALEVQCSSLSLERLKERSDAYRSHGYQVYWLLGKKLWLKERLTKLQAGFLYFSQN
RGFHLWELDLTKKELRLQYLIHEDLRGRLHYQTEVFPFGQRSLLEVLRTPYLSQPMQQMAVELDRTFLTYIQQQLFYRHP
KWLKLQEELYMQGQHLMELGLDFFYPLCRPILSQNLLQIKEDVEGYYQQFMTYYQSQGIQSVQILYPPRFYAQQKS

Nucleotide


Download         Length: 951 bp        

>NTDB_id=388990 LPB220_RS04160 WP_150905723.1 778564..779514(+) (coiA) [Streptococcus sp. LPB0220]
ATGTTTATTGCCATGGATAACAATCAAAAGCGGTGGAACTGTATGGAAGAGATCCCAGCTGTGACAGAAGGTCCCTTCTA
TTGCTTAGCTTGTCATAGTCCAGTGCGTCTAAAAAATGGCTCGGTTCTACGGGCTCATTTTGCTCATGTAGAATTACAGC
ATTGTCCCTATCATCACGAAGCGGAGAGTTTTGAACATCTGGAATTGAAAGCCAGTCTTTATGACTGGGCCTCTAAGGAG
TCTAAAACAGAGGTAGAAAGTTATTTAGCAGACTTTCAACAAATTGCCGATCTTTTGGTAGTAGACAAGAACTTAGCTTT
GGAAGTGCAGTGCAGCTCCCTATCTTTAGAACGCTTGAAGGAGAGAAGCGATGCTTATCGATCCCATGGTTACCAGGTCT
ATTGGTTACTTGGTAAAAAGTTGTGGCTCAAGGAAAGACTGACAAAGCTACAGGCTGGTTTTCTTTATTTTAGTCAGAAT
CGCGGGTTCCATCTTTGGGAATTGGATCTGACAAAGAAAGAGTTACGTTTGCAATACCTCATCCATGAGGATTTGAGAGG
GCGATTGCATTATCAAACAGAAGTTTTCCCTTTTGGTCAAAGGTCTTTACTGGAAGTCTTACGGACCCCTTATCTTTCGC
AACCAATGCAGCAAATGGCAGTCGAGCTCGATCGGACATTTTTAACGTATATACAGCAGCAACTCTTTTATCGTCATCCA
AAGTGGCTGAAGCTTCAGGAAGAACTCTATATGCAGGGACAACATCTGATGGAACTGGGGCTAGATTTCTTTTATCCTCT
TTGTCGTCCGATCCTTTCACAGAACTTGCTCCAAATTAAAGAGGATGTAGAAGGTTACTACCAGCAATTTATGACCTATT
ATCAGTCGCAAGGAATCCAATCCGTTCAGATCCTTTATCCCCCACGTTTTTATGCTCAACAGAAAAGCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(23-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5J6LLQ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

51.118

99.051

0.506
  coiA Streptococcus pneumoniae Rx1

50.16

99.051

0.497
  coiA Streptococcus pneumoniae D39

50.16

99.051

0.497
  coiA Streptococcus pneumoniae R6

50.16

99.051

0.497
  coiA Streptococcus pneumoniae TIGR4

50.16

99.051

0.497
  coiA Lactococcus lactis subsp. cremoris KW2

43.478

100

0.443

Multiple sequence alignment