Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LPB220_RS04165 Genome accession   NZ_CP044230
Coordinates   779781..781583 (+) Length   600 a.a.
NCBI ID   WP_031573459.1    Uniprot ID   A0A2I1TV43
Organism   Streptococcus sp. LPB0220     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 774781..786583
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB220_RS04145 (LPB220_04145) - 775158..776504 (+) 1347 WP_150905717.1 DUF1958 domain-containing protein -
  LPB220_RS04150 (LPB220_04150) - 776575..777747 (+) 1173 WP_150905720.1 MFS transporter -
  LPB220_RS04155 (LPB220_04155) - 777915..778490 (+) 576 WP_150905721.1 hypothetical protein -
  LPB220_RS04160 (LPB220_04160) coiA 778564..779514 (+) 951 WP_150905723.1 competence protein CoiA Machinery gene
  LPB220_RS04165 (LPB220_04165) pepF 779781..781583 (+) 1803 WP_031573459.1 oligoendopeptidase F Regulator
  LPB220_RS04170 (LPB220_04170) - 781585..782304 (+) 720 WP_150905725.1 O-methyltransferase -
  LPB220_RS04175 (LPB220_04175) prsA 782377..783321 (+) 945 WP_150905727.1 peptidylprolyl isomerase PrsA -
  LPB220_RS04180 (LPB220_04180) - 783575..784060 (+) 486 WP_150905729.1 LURP-one-related/scramblase family protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69152.00 Da        Isoelectric Point: 4.6017

>NTDB_id=388991 LPB220_RS04165 WP_031573459.1 779781..781583(+) (pepF) [Streptococcus sp. LPB0220]
MVKQRNEIDEKYQWDLSTIFATDQAWEEEAASLAADIKAASHYAGHLLDSAQTLLDTTNAYLELSRRLEKVYVYAHMKND
QDTRVAKYQEYQSKGMSLYSLLGETFAFYEPEFMAITDEQYKAFVSEVPALEQYGHYFDRLLEKKEHVLSQKEEELLAGA
GEIFAAGGETFEILDNADIVFPTVHDDKGEEVQLTHGNYISLVESKDRAVRKEAYEGLYKVYEQYQHTYAKTLQTNVKVH
NFNAKVRKFSSAREAALSENFVPESVYDSLVAAVNKHLPLLQRYVQLRSKILGISDLKMYDMYTPLSDTDYKFTYEESLA
KAEEVLAVLGEDYLSRVKRAFSERWIDVHVNQGKRSGAYSGGSYDTNAFMLLNWQDTLDNLFTLVHETGHSMHSSYTRET
QPYVYGDYSIFLAEIASTTNENILTERLLEEVEDDATRFAILNHFLDGFRGTVFRQTQFAEFEHAIHKADQEGTVLTSEF
LNNLYAELNEKYYGLSKEDNPEIQYEWARIPHFYYNYYVFQYSTGFAAASALAEKIVHGTQEDRDKYIDYLKAGNSDYPL
NVIRKAGVDMEKEDYLDAAFAVFERRLNEFEALVEKLGLA

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=388991 LPB220_RS04165 WP_031573459.1 779781..781583(+) (pepF) [Streptococcus sp. LPB0220]
ATGGTAAAACAACGTAATGAAATTGATGAAAAATACCAATGGGATTTGTCGACAATTTTTGCGACAGATCAAGCTTGGGA
AGAAGAAGCAGCTAGCTTAGCTGCAGATATTAAAGCAGCAAGCCACTATGCTGGTCATTTGTTGGATTCGGCGCAAACAC
TGTTGGATACAACCAATGCATATTTGGAATTGAGCCGTCGCTTAGAAAAGGTCTACGTCTATGCTCATATGAAAAATGAC
CAAGACACACGAGTGGCTAAATACCAAGAGTACCAATCAAAAGGGATGTCTCTTTATAGCTTGTTGGGTGAAACCTTTGC
CTTCTATGAGCCTGAATTCATGGCCATTACGGATGAGCAGTACAAGGCCTTTGTGAGTGAAGTTCCAGCCTTGGAACAAT
ATGGTCATTATTTTGATCGTTTGCTAGAGAAAAAAGAACATGTCTTGTCTCAAAAAGAAGAGGAATTACTTGCAGGAGCT
GGTGAGATCTTTGCGGCTGGTGGTGAAACCTTTGAAATCTTGGACAATGCAGATATTGTTTTCCCAACTGTACATGATGA
CAAGGGTGAAGAAGTTCAATTAACCCATGGAAACTATATTTCTTTGGTAGAATCTAAAGATCGTGCCGTTCGTAAAGAAG
CTTACGAAGGCCTCTACAAGGTTTATGAACAGTACCAACATACCTATGCTAAAACCTTGCAAACCAATGTGAAAGTTCAT
AACTTTAATGCTAAAGTTCGCAAATTCTCTTCTGCCCGTGAAGCGGCCCTTTCTGAAAACTTTGTACCAGAAAGTGTTTA
TGATAGCTTGGTAGCAGCTGTGAACAAACACTTGCCACTCTTGCAACGCTATGTGCAATTGCGTTCAAAAATTCTAGGAA
TCTCAGACTTGAAGATGTACGATATGTATACGCCATTATCCGATACAGACTACAAGTTTACCTATGAAGAATCATTGGCC
AAAGCAGAAGAAGTCTTGGCTGTTTTGGGTGAGGACTACCTTTCTCGTGTGAAACGTGCCTTTAGCGAACGGTGGATCGA
TGTGCATGTCAACCAAGGAAAACGTTCAGGTGCCTATTCAGGTGGTTCTTATGATACCAATGCCTTCATGTTGTTGAACT
GGCAAGATACATTGGATAATCTCTTCACCTTGGTGCATGAAACTGGTCACAGTATGCATTCTAGCTATACCCGTGAAACC
CAGCCTTATGTCTATGGGGACTATTCAATTTTCCTTGCTGAAATCGCCTCTACAACCAATGAAAATATCTTGACCGAACG
TCTGTTAGAAGAAGTAGAAGACGATGCAACTCGTTTTGCTATTTTGAATCACTTCTTGGATGGCTTCCGTGGAACCGTCT
TCCGTCAAACGCAGTTTGCTGAATTTGAGCATGCCATTCATAAAGCAGACCAAGAAGGTACCGTTTTGACTAGTGAGTTC
TTGAACAACCTTTATGCAGAGCTCAATGAAAAATACTATGGTCTTTCAAAAGAAGACAACCCTGAGATCCAATATGAATG
GGCTCGGATTCCTCACTTCTACTATAACTACTATGTCTTCCAATATTCAACAGGTTTTGCAGCAGCTTCAGCCTTAGCTG
AAAAAATTGTTCATGGAACACAAGAAGATCGTGATAAATATATCGACTACTTGAAGGCTGGAAATTCTGACTATCCACTC
AATGTCATCCGCAAAGCAGGTGTGGATATGGAAAAAGAAGACTACTTGGACGCAGCCTTTGCGGTCTTTGAACGTCGGTT
GAATGAATTTGAAGCCCTAGTAGAAAAATTAGGACTCGCATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2I1TV43

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

69.631

99.333

0.692

Multiple sequence alignment