Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | F6X00_RS15280 | Genome accession | NZ_CP044206 |
| Coordinates | 3133710..3134012 (-) | Length | 100 a.a. |
| NCBI ID | WP_011078144.1 | Uniprot ID | - |
| Organism | Vibrio vulnificus strain Vv180806 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3128710..3139012
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F6X00_RS15255 (F6X00_15600) | - | 3129265..3130479 (+) | 1215 | WP_011080966.1 | pyridoxal phosphate-dependent aminotransferase | - |
| F6X00_RS15260 (F6X00_15605) | yfbR | 3130596..3131144 (+) | 549 | WP_231846899.1 | 5'-deoxynucleotidase | - |
| F6X00_RS15265 (F6X00_15610) | - | 3131150..3132481 (+) | 1332 | WP_011078141.1 | anti-phage deoxyguanosine triphosphatase | - |
| F6X00_RS15270 (F6X00_15615) | - | 3132503..3133111 (-) | 609 | WP_080538096.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| F6X00_RS15275 (F6X00_15620) | rrtA | 3133091..3133681 (+) | 591 | WP_182290065.1 | rhombosortase | - |
| F6X00_RS15280 (F6X00_15625) | comEA | 3133710..3134012 (-) | 303 | WP_011078144.1 | helix-hairpin-helix domain-containing protein | Machinery gene |
| F6X00_RS15285 (F6X00_15630) | ppiD | 3134145..3136004 (-) | 1860 | WP_045619880.1 | peptidylprolyl isomerase | - |
| F6X00_RS15290 (F6X00_15635) | - | 3136181..3136453 (-) | 273 | WP_013572181.1 | HU family DNA-binding protein | - |
| F6X00_RS15295 (F6X00_15640) | lon | 3136647..3138998 (-) | 2352 | WP_045619879.1 | endopeptidase La | - |
Sequence
Protein
Download Length: 100 a.a. Molecular weight: 10866.71 Da Isoelectric Point: 9.6573
>NTDB_id=388769 F6X00_RS15280 WP_011078144.1 3133710..3134012(-) (comEA) [Vibrio vulnificus strain Vv180806]
MKQVITLLAMLMAFSFPSVSFADSATKAADKYEGIEISVNINTATAEEIAMMLKGVGIKKAQQIVDFREANGPFKTVDEL
AQVKGIGKSTIEKNQSRIKL
MKQVITLLAMLMAFSFPSVSFADSATKAADKYEGIEISVNINTATAEEIAMMLKGVGIKKAQQIVDFREANGPFKTVDEL
AQVKGIGKSTIEKNQSRIKL
Nucleotide
Download Length: 303 bp
>NTDB_id=388769 F6X00_RS15280 WP_011078144.1 3133710..3134012(-) (comEA) [Vibrio vulnificus strain Vv180806]
ATGAAACAGGTAATTACCCTTTTAGCCATGCTAATGGCATTCTCTTTTCCTTCCGTTTCTTTTGCGGACTCTGCAACGAA
AGCAGCCGATAAATATGAAGGCATTGAGATTTCCGTCAATATCAACACAGCGACAGCAGAAGAAATTGCCATGATGTTAA
AAGGCGTTGGTATTAAAAAAGCTCAGCAAATTGTTGACTTTAGAGAAGCTAATGGACCGTTTAAAACGGTTGATGAGTTA
GCTCAAGTGAAAGGAATCGGTAAATCAACGATTGAGAAAAATCAGTCACGGATTAAGTTGTAA
ATGAAACAGGTAATTACCCTTTTAGCCATGCTAATGGCATTCTCTTTTCCTTCCGTTTCTTTTGCGGACTCTGCAACGAA
AGCAGCCGATAAATATGAAGGCATTGAGATTTCCGTCAATATCAACACAGCGACAGCAGAAGAAATTGCCATGATGTTAA
AAGGCGTTGGTATTAAAAAAGCTCAGCAAATTGTTGACTTTAGAGAAGCTAATGGACCGTTTAAAACGGTTGATGAGTTA
GCTCAAGTGAAAGGAATCGGTAAATCAACGATTGAGAAAAATCAGTCACGGATTAAGTTGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
59 |
100 |
0.59 |
| comEA | Vibrio campbellii strain DS40M4 |
54 |
100 |
0.54 |
| comEA | Vibrio cholerae C6706 |
52.041 |
98 |
0.51 |
| comEA | Vibrio cholerae strain A1552 |
52.041 |
98 |
0.51 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
60 |
60 |
0.36 |