Detailed information NTG0388471

Bioinformatically predicted

Overview

• Name: ctsD
• Type: Machinery gene
• Locus tag: F4V27_RS02245
• Genome accession: NZ_CP044167
• Coordinates: 452423..453835 (-)
• Length: 470 a.a.
• NCBI ID: WP_002862130.1
• Uniprot ID: A0A1E7P8U9
• Organism: Campylobacter jejuni strain AR-0415
• Function: type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 447423..458835

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
F4V27_RS02220	-	447747..448511 (+)	765	WP_002855301.1	TSUP family transporter	-
F4V27_RS02225	ctsF	448504..449685 (-)	1182	WP_002936488.1	type II secretion system F family protein	Machinery gene
F4V27_RS02230	ctsE	449682..451241 (-)	1560	WP_057100488.1	GspE/PulE family protein	Machinery gene
F4V27_RS02235	ctsX	451231..451818 (-)	588	WP_002936491.1	hypothetical protein	Machinery gene
F4V27_RS02240	ctsP	451822..452430 (-)	609	WP_002862129.1	ATP-binding protein	Machinery gene
F4V27_RS02245	ctsD	452423..453835 (-)	1413	WP_002862130.1	pilus (MSHA type) biogenesis protein MshL	Machinery gene
F4V27_RS02250	ctsR	453813..454124 (-)	312	WP_002862131.1	hypothetical protein	Machinery gene
F4V27_RS02255	nifJ	454148..457708 (-)	3561	WP_002936499.1	pyruvate:ferredoxin (flavodoxin) oxidoreductase	-
F4V27_RS02260	-	457801..458442 (-)	642	WP_002867040.1	HAD family hydrolase	-

Sequence

Protein

• Length: 470 a.a.
• Molecular weight: 53055.57 Da
• Isoelectric Point: 6.6184

>NTDB_id=388471 F4V27_RS02245 WP_002862130.1 452423..453835(-) (ctsD) [Campylobacter jejuni strain AR-0415]
MIRLILINILFCHYLYALDCQKRLFDISINEKLSIQESLDELAKYCSFSIIVKDKIAKEKLETLQNSVNIHQMSLDEIFN
FFIKEHDLSYDFDGKILRISGINTKIFKISYITSIREGQSITKASVDAKPRQSEYSGSFDDAEDNMIKSMEKFDFWQNIE
KEIIVLLKNSHEDYEAKTPIINPNAGLIIVTGTNSQLKSVKNYLQKLENRLKKQVIIDVSILAVSLNESHSSGINWQNFN
IGLNSQVNNENSFIQFQNGQGFVKNLGLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKESSK
GTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTIQKKLSSVVQVENNQ
TLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVLNSKATEIVFIITPSIVDSVNAPSLKDLGFKHYE

Nucleotide

• Length: 1413 bp

>NTDB_id=388471 F4V27_RS02245 WP_002862130.1 452423..453835(-) (ctsD) [Campylobacter jejuni strain AR-0415]
ATGATAAGATTAATATTAATTAACATTCTTTTTTGCCATTATCTTTATGCTTTAGATTGTCAAAAGCGTCTTTTTGATAT
CAGTATTAATGAAAAATTAAGCATACAAGAAAGTCTTGATGAGCTTGCAAAATATTGTTCTTTTAGTATTATTGTTAAAG
ATAAAATTGCCAAAGAAAAATTAGAGACATTGCAAAACTCTGTCAATATTCATCAAATGAGTTTGGACGAAATTTTTAAT
TTTTTTATCAAAGAGCATGATCTTAGCTATGATTTTGATGGTAAAATTTTAAGAATTTCAGGCATTAATACGAAGATTTT
TAAGATAAGTTATATCACTTCTATCAGAGAAGGACAAAGCATAACTAAAGCGTCTGTAGACGCTAAACCAAGGCAAAGTG
AATATAGCGGTAGTTTTGATGACGCAGAAGACAATATGATTAAAAGTATGGAAAAATTTGATTTTTGGCAAAATATAGAA
AAAGAGATTATTGTATTATTAAAAAATTCTCATGAAGATTATGAGGCTAAAACTCCCATTATAAATCCCAATGCAGGTCT
TATTATAGTAACTGGAACAAATTCTCAGTTAAAAAGTGTGAAAAATTATTTGCAAAAACTAGAAAATCGTCTTAAAAAAC
AAGTTATTATCGATGTTAGCATACTTGCTGTGAGTTTAAATGAAAGCCATTCTAGTGGGATTAATTGGCAAAATTTTAAT
ATAGGTTTAAATTCGCAAGTAAATAATGAAAATTCTTTTATTCAGTTTCAAAATGGGCAAGGTTTTGTTAAGAATTTGGG
TTTAAGGGCGAATTTAAATTTTGATTCTATTATTAACTTTCTTTCTCAAAATGGAAAAACTAGCGTGCTTTCTAATCCAA
AGCTTATGGCTTTAAATAACCAACAAGCCATTATTTCTGTAGGCGATACTATAAATTATCAAGTTAAAGAAAGTTCTAAA
GGCACTGAAAATGGGACTACTGTTAGTGAAAGTTATAACAATTATTCTATTTTTGTAGGCATTTTACTCAATATCTTGCC
TGAAATTTCTGATGATGGAAAAATAATGCTTAGGATTAATCCAAGCTTAAGTGATTTTAAGTATCCAGAAGATAATAAAC
GACAAAAAGAACCAAGAACTATTGCTCCTGATACCATACAAAAAAAGCTTTCTAGTGTTGTGCAAGTAGAGAATAATCAA
ACTTTAATTTTAGGTGGATTGATTTCTCACGATAAATCTAATGAGAAAAATTCTATCAATTTTCTATCAAAAATTCCAAT
CCTAGGTTCTTTGTTTAAAGGAGAAGTTTTAAATTCTAAAGCAACCGAAATTGTTTTTATTATCACTCCAAGTATAGTAG
ATAGTGTAAACGCTCCAAGTCTTAAAGATCTAGGATTTAAGCATTATGAGTAA

Domains

Predicted by InterproScan.

• Bacterial type II and III secretion system protein (Secretin) (281-454)

3D structure

• AlphaFold DB: A0A1E7P8U9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ctsD	Campylobacter jejuni subsp. jejuni 81-176	99.574	100	0.996