Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   F4V27_RS02250 Genome accession   NZ_CP044167
Coordinates   453813..454124 (-) Length   103 a.a.
NCBI ID   WP_002862131.1    Uniprot ID   -
Organism   Campylobacter jejuni strain AR-0415     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 448813..459124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F4V27_RS02230 ctsE 449682..451241 (-) 1560 WP_057100488.1 GspE/PulE family protein Machinery gene
  F4V27_RS02235 ctsX 451231..451818 (-) 588 WP_002936491.1 hypothetical protein Machinery gene
  F4V27_RS02240 ctsP 451822..452430 (-) 609 WP_002862129.1 ATP-binding protein Machinery gene
  F4V27_RS02245 ctsD 452423..453835 (-) 1413 WP_002862130.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  F4V27_RS02250 ctsR 453813..454124 (-) 312 WP_002862131.1 hypothetical protein Machinery gene
  F4V27_RS02255 nifJ 454148..457708 (-) 3561 WP_002936499.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  F4V27_RS02260 - 457801..458442 (-) 642 WP_002867040.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12449.35 Da        Isoelectric Point: 6.4656

>NTDB_id=388472 F4V27_RS02250 WP_002862131.1 453813..454124(-) (ctsR) [Campylobacter jejuni strain AR-0415]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIHEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=388472 F4V27_RS02250 WP_002862131.1 453813..454124(-) (ctsR) [Campylobacter jejuni strain AR-0415]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGCATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATACATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

99.029

100

0.99

Multiple sequence alignment