Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsX   Type   Machinery gene
Locus tag   F4V27_RS02235 Genome accession   NZ_CP044167
Coordinates   451231..451818 (-) Length   195 a.a.
NCBI ID   WP_002936491.1    Uniprot ID   A0A5C7EMF2
Organism   Campylobacter jejuni strain AR-0415     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 446231..456818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F4V27_RS02215 - 446979..447743 (+) 765 WP_057100487.1 TIGR02757 family protein -
  F4V27_RS02220 - 447747..448511 (+) 765 WP_002855301.1 TSUP family transporter -
  F4V27_RS02225 ctsF 448504..449685 (-) 1182 WP_002936488.1 type II secretion system F family protein Machinery gene
  F4V27_RS02230 ctsE 449682..451241 (-) 1560 WP_057100488.1 GspE/PulE family protein Machinery gene
  F4V27_RS02235 ctsX 451231..451818 (-) 588 WP_002936491.1 hypothetical protein Machinery gene
  F4V27_RS02240 ctsP 451822..452430 (-) 609 WP_002862129.1 ATP-binding protein Machinery gene
  F4V27_RS02245 ctsD 452423..453835 (-) 1413 WP_002862130.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  F4V27_RS02250 ctsR 453813..454124 (-) 312 WP_002862131.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 23345.40 Da        Isoelectric Point: 9.8409

>NTDB_id=388469 F4V27_RS02235 WP_002936491.1 451231..451818(-) (ctsX) [Campylobacter jejuni strain AR-0415]
MQERIKELELRYKYFLLKKYLKYLLLVILISVIAFCFFVLMQKYNKQKNIYLQAIEHKKHLEQKILQAQILQEKNKISRE
KLYKELEEVKAVQENTHISKIEIDSKILNISDLKKSFYQNPSYEKALNLAKKYFDIKAYQKTIFWALKANELDKQKQDSW
LIFAQAKRALGEEKEAQSALDAYINYYGLMELDGK

Nucleotide


Download         Length: 588 bp        

>NTDB_id=388469 F4V27_RS02235 WP_002936491.1 451231..451818(-) (ctsX) [Campylobacter jejuni strain AR-0415]
ATGCAAGAAAGAATTAAAGAGCTTGAGCTTAGGTATAAATACTTTTTACTTAAAAAATATTTAAAATATTTATTGTTAGT
TATTTTAATATCAGTTATAGCATTTTGTTTTTTTGTGCTAATGCAAAAATATAATAAGCAAAAAAATATTTATTTGCAAG
CTATTGAACATAAAAAGCATTTAGAGCAAAAGATTCTTCAAGCGCAAATTTTACAAGAAAAAAATAAGATTTCTAGGGAA
AAGTTATATAAAGAACTAGAAGAAGTTAAAGCGGTGCAGGAAAATACACATATTAGTAAGATAGAAATTGATTCTAAAAT
TTTAAATATTTCTGATTTAAAAAAATCTTTTTATCAAAATCCAAGCTATGAAAAGGCTTTAAATTTAGCTAAGAAGTATT
TTGATATTAAAGCTTATCAAAAGACAATATTTTGGGCTTTAAAAGCCAATGAACTTGACAAGCAAAAACAAGATTCTTGG
CTGATTTTTGCTCAGGCTAAAAGAGCTTTAGGTGAAGAAAAAGAAGCTCAAAGTGCTTTAGATGCTTATATAAATTATTA
TGGTTTAATGGAATTAGATGGAAAGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5C7EMF2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsX Campylobacter jejuni subsp. jejuni 81-176

99.487

100

0.995

Multiple sequence alignment