Detailed information NTG0388467

Bioinformatically predicted

Overview

• Name: ctsF
• Type: Machinery gene
• Locus tag: F4V27_RS02225
• Genome accession: NZ_CP044167
• Coordinates: 448504..449685 (-)
• Length: 393 a.a.
• NCBI ID: WP_002936488.1
• Uniprot ID: A0A5Z1H404
• Organism: Campylobacter jejuni strain AR-0415
• Function: type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 443504..454685

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
F4V27_RS02195	-	444049..444390 (+)	342	WP_002784057.1	hypothetical protein	-
F4V27_RS02200	flgM	444453..444650 (+)	198	WP_002855791.1	flagellar biosynthesis anti-sigma factor FlgM	-
F4V27_RS02205	-	444692..445126 (+)	435	WP_002779263.1	flagellar protein FlgN	-
F4V27_RS02210	flgK	445136..446962 (+)	1827	WP_057100486.1	flagellar hook-associated protein FlgK	-
F4V27_RS02215	-	446979..447743 (+)	765	WP_057100487.1	TIGR02757 family protein	-
F4V27_RS02220	-	447747..448511 (+)	765	WP_002855301.1	TSUP family transporter	-
F4V27_RS02225	ctsF	448504..449685 (-)	1182	WP_002936488.1	type II secretion system F family protein	Machinery gene
F4V27_RS02230	ctsE	449682..451241 (-)	1560	WP_057100488.1	GspE/PulE family protein	Machinery gene
F4V27_RS02235	ctsX	451231..451818 (-)	588	WP_002936491.1	hypothetical protein	Machinery gene
F4V27_RS02240	ctsP	451822..452430 (-)	609	WP_002862129.1	ATP-binding protein	Machinery gene
F4V27_RS02245	ctsD	452423..453835 (-)	1413	WP_002862130.1	pilus (MSHA type) biogenesis protein MshL	Machinery gene
F4V27_RS02250	ctsR	453813..454124 (-)	312	WP_002862131.1	hypothetical protein	Machinery gene

Sequence

Protein

• Length: 393 a.a.
• Molecular weight: 45794.38 Da
• Isoelectric Point: 9.0938

>NTDB_id=388467 F4V27_RS02225 WP_002936488.1 448504..449685(-) (ctsF) [Campylobacter jejuni strain AR-0415]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYFMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGTSLPFITHVMLEIYNFLDDYGIFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFLKIPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLVFLEPMMTLFVALLVLFLALGIFLPMWELSSGVNFN

Nucleotide

• Length: 1182 bp

>NTDB_id=388467 F4V27_RS02225 WP_002936488.1 448504..449685(-) (ctsF) [Campylobacter jejuni strain AR-0415]
ATGAAATTTTATGAAGTAGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAAG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTGGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATTTTATGCATTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCTCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCCTTGATAAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCACGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAATACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTATTTTCTATGCTTAGCGTTGCGATGAAAAGTGGAAGACTTGAAGTGTTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGTGAAAATTTAATGGATAGATTTTTGGTTTTTTTAGAGCCTATGATGACTTTATTTGTGGCGCTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGGTCAATTTTAACTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (261-382)

• Type II secretion system (T2SS), protein F (T2SSF) (60-179)

3D structure

• AlphaFold DB: A0A5Z1H404

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ctsF	Campylobacter jejuni subsp. jejuni 81-176	99.235	99.746	0.99