Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsE   Type   Machinery gene
Locus tag   F4V27_RS02230 Genome accession   NZ_CP044167
Coordinates   449682..451241 (-) Length   519 a.a.
NCBI ID   WP_057100488.1    Uniprot ID   -
Organism   Campylobacter jejuni strain AR-0415     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 444682..456241
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F4V27_RS02205 - 444692..445126 (+) 435 WP_002779263.1 flagellar protein FlgN -
  F4V27_RS02210 flgK 445136..446962 (+) 1827 WP_057100486.1 flagellar hook-associated protein FlgK -
  F4V27_RS02215 - 446979..447743 (+) 765 WP_057100487.1 TIGR02757 family protein -
  F4V27_RS02220 - 447747..448511 (+) 765 WP_002855301.1 TSUP family transporter -
  F4V27_RS02225 ctsF 448504..449685 (-) 1182 WP_002936488.1 type II secretion system F family protein Machinery gene
  F4V27_RS02230 ctsE 449682..451241 (-) 1560 WP_057100488.1 GspE/PulE family protein Machinery gene
  F4V27_RS02235 ctsX 451231..451818 (-) 588 WP_002936491.1 hypothetical protein Machinery gene
  F4V27_RS02240 ctsP 451822..452430 (-) 609 WP_002862129.1 ATP-binding protein Machinery gene
  F4V27_RS02245 ctsD 452423..453835 (-) 1413 WP_002862130.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  F4V27_RS02250 ctsR 453813..454124 (-) 312 WP_002862131.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 519 a.a.        Molecular weight: 60137.97 Da        Isoelectric Point: 5.7035

>NTDB_id=388468 F4V27_RS02230 WP_057100488.1 449682..451241(-) (ctsE) [Campylobacter jejuni strain AR-0415]
MESRMDKIFQAYIDNEISLDEICTKFNITSWDFFKKLANFCNLHFVDLDEDNDFIYEGIPFSLLLKFKFLLIKNNDGFMI
IRSKPCSLELLEQVKTFMICEKIDTAIADELKIAKILNQIRIQEEIKRLSIKLRLEWQENQKRDDQSCISQIFDFLLHEI
LSFHASDIHIEARNDDALIRFRVDGILREFAIFEKDIYEALVFHIKFLACLNLAESRKTQDGSFELDFENERYDFRVSCL
PLIYGESVVIRILKHDKEILDLYKLNLGNKNLEILKKILHRPNGMILLTGPTGSGKSTTLYACLNELKSIEKKIISAEDP
IEYKIPLVQQILLNSKVGVEFNSVLRAILRQDPDIIMIGEIRDEESLDIALKASLTGHLLLSTLHTNDALSTIDRLLDMQ
AKSYLIASALSLVIAQRLVRKLCPWCKQKSKKHYIEFEGEFFEPKGCERCHHSGFFGRELIAECLEINEDLACAIRENQD
KTILMELAKKYGFQTMFEQGLKKAKEGLTSIDELLRVVR

Nucleotide


Download         Length: 1560 bp        

>NTDB_id=388468 F4V27_RS02230 WP_057100488.1 449682..451241(-) (ctsE) [Campylobacter jejuni strain AR-0415]
ATGGAAAGTAGAATGGATAAAATTTTTCAAGCTTATATTGATAATGAAATAAGTCTTGATGAAATTTGCACTAAATTTAA
TATCACTTCTTGGGATTTTTTTAAAAAATTAGCAAATTTTTGTAATTTACATTTTGTTGATTTAGATGAAGATAATGATT
TTATTTATGAAGGTATACCTTTTTCTTTACTTTTAAAATTTAAATTTCTGCTTATTAAAAACAATGACGGCTTTATGATT
ATTAGATCCAAACCTTGTTCTTTAGAGCTTTTAGAGCAAGTTAAGACTTTTATGATTTGTGAAAAAATCGACACTGCAAT
TGCCGATGAATTAAAGATAGCTAAAATTTTAAATCAAATTCGCATTCAAGAGGAGATTAAAAGATTAAGCATTAAGCTTA
GACTTGAATGGCAAGAAAATCAAAAAAGAGATGATCAAAGTTGCATCAGTCAAATTTTTGATTTTTTATTACATGAAATT
TTATCTTTTCATGCGAGTGATATTCATATAGAAGCAAGGAATGATGACGCTTTGATTAGGTTTAGGGTTGATGGAATTTT
GCGTGAATTTGCTATTTTTGAGAAGGATATTTATGAAGCTTTGGTTTTTCATATCAAATTTTTAGCTTGTTTGAATTTAG
CTGAATCAAGAAAAACGCAAGATGGAAGTTTTGAATTAGATTTTGAAAATGAAAGATATGATTTTCGTGTTTCATGTTTG
CCTTTGATTTATGGCGAAAGTGTTGTTATAAGAATTTTAAAACATGATAAAGAAATTTTGGATTTGTATAAACTAAATCT
TGGAAATAAAAATTTAGAAATTTTAAAAAAGATTTTACATCGTCCCAATGGAATGATTTTATTAACCGGCCCTACAGGTA
GTGGTAAAAGCACAACTTTATACGCGTGTTTAAATGAGTTGAAAAGTATTGAAAAAAAGATTATCTCCGCAGAAGATCCT
ATAGAGTATAAAATTCCTTTAGTGCAGCAAATTTTGCTCAATTCAAAAGTTGGAGTCGAGTTTAATAGTGTTTTAAGAGC
AATTTTAAGGCAAGATCCTGATATTATCATGATAGGAGAAATTCGCGATGAAGAAAGTTTAGATATTGCACTTAAAGCTT
CTTTAACAGGTCATTTGCTTTTAAGCACCTTGCATACTAATGATGCTCTTAGTACCATTGATAGGCTTTTGGATATGCAA
GCAAAAAGTTACTTGATAGCATCAGCTTTGAGTCTTGTTATAGCGCAGCGTTTGGTTAGAAAACTTTGTCCTTGGTGTAA
GCAAAAAAGCAAAAAACATTATATTGAATTTGAAGGTGAATTTTTTGAACCAAAAGGATGTGAGCGTTGTCATCATAGTG
GATTTTTTGGCAGAGAATTAATCGCTGAGTGCTTAGAGATCAATGAAGATTTAGCTTGTGCAATTAGGGAAAATCAAGAT
AAAACGATTTTAATGGAGCTTGCAAAAAAATATGGTTTTCAAACTATGTTTGAACAAGGTTTAAAAAAAGCCAAAGAAGG
TCTTACAAGTATAGATGAGCTTTTAAGGGTTGTAAGATGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(157-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsE Campylobacter jejuni subsp. jejuni 81-176

99.615

100

0.996

Multiple sequence alignment