Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AXYL_RS31505 Genome accession   NC_014640
Coordinates   6841920..6842441 (-) Length   173 a.a.
NCBI ID   WP_013396947.1    Uniprot ID   E3HRP1
Organism   Achromobacter xylosoxidans A8     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6836920..6847441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AXYL_RS31490 (AXYL_06364) - 6837004..6839013 (-) 2010 WP_013396944.1 hypothetical protein -
  AXYL_RS31495 (AXYL_06365) - 6839010..6840554 (-) 1545 WP_013396945.1 site-specific integrase -
  AXYL_RS31500 (AXYL_06366) - 6840529..6841587 (-) 1059 WP_237709960.1 tyrosine-type recombinase/integrase -
  AXYL_RS31505 (AXYL_06367) ssb 6841920..6842441 (-) 522 WP_013396947.1 single-stranded DNA-binding protein Machinery gene
  AXYL_RS31510 (AXYL_06368) - 6842735..6843931 (-) 1197 WP_013396948.1 MFS transporter -
  AXYL_RS31515 (AXYL_06369) uvrA 6844118..6846973 (+) 2856 WP_013396949.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18616.66 Da        Isoelectric Point: 5.9702

>NTDB_id=38833 AXYL_RS31505 WP_013396947.1 6841920..6842441(-) (ssb) [Achromobacter xylosoxidans A8]
MASVNKVILVGNLGRDPEVRYSPEGAAICNMSIATTSTWKDKASGERREETEWHRVVMYNRLAEIAGEYLKKGRSVYIEG
RLKTRKWQDKDTGADRYSTEVVADQMQMLGGREDGGGGGASFGGGGGYDDAPSRPAQQRAPAQRPAPQQRPAPAAAPASS
GANLADMDDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=38833 AXYL_RS31505 WP_013396947.1 6841920..6842441(-) (ssb) [Achromobacter xylosoxidans A8]
ATGGCATCGGTTAACAAAGTCATACTCGTGGGCAATCTGGGACGCGACCCGGAAGTCCGCTACAGCCCCGAAGGGGCGGC
AATCTGCAATATGTCCATTGCCACCACCTCCACCTGGAAAGACAAGGCTTCGGGCGAACGCCGCGAAGAAACGGAATGGC
ACCGCGTCGTCATGTACAACCGCCTGGCTGAAATCGCCGGCGAATACCTGAAGAAGGGCCGCTCGGTCTACATCGAAGGC
CGTCTGAAGACGCGCAAGTGGCAAGACAAGGACACCGGCGCTGACCGCTACAGCACCGAAGTCGTCGCCGACCAGATGCA
GATGCTGGGTGGCCGCGAAGACGGCGGCGGCGGTGGCGCAAGCTTTGGCGGCGGTGGTGGCTACGACGACGCGCCTTCGC
GTCCGGCACAGCAGCGCGCCCCGGCCCAGCGCCCGGCCCCGCAACAGCGCCCGGCGCCCGCAGCGGCTCCGGCCAGCAGC
GGTGCTAATTTGGCGGATATGGACGACGATATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E3HRP1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.738

100

0.59
  ssb Neisseria meningitidis MC58

53.039

100

0.555
  ssb Neisseria gonorrhoeae MS11

53.143

100

0.538
  ssb Glaesserella parasuis strain SC1401

48.925

100

0.526

Multiple sequence alignment