Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   FOB54_RS20175 Genome accession   NZ_CP044097
Coordinates   4240308..4241828 (-) Length   506 a.a.
NCBI ID   WP_049011333.1    Uniprot ID   -
Organism   Citrobacter koseri strain FDAARGOS_646     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4235308..4246828
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB54_RS20165 (FOB54_20170) hdfR 4238991..4239836 (-) 846 WP_012131114.1 HTH-type transcriptional regulator HdfR -
  FOB54_RS20170 (FOB54_20175) maoP 4239943..4240281 (+) 339 WP_012131115.1 macrodomain Ori organization protein MaoP -
  FOB54_RS20175 (FOB54_20180) comM 4240308..4241828 (-) 1521 WP_049011333.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  FOB54_RS20180 (FOB54_20185) ilvL 4242180..4242278 (+) 99 WP_001311244.1 ilv operon leader peptide -
  FOB54_RS22000 ilvX 4242365..4242415 (+) 51 WP_202401504.1 peptide IlvX -
  FOB54_RS20185 (FOB54_20190) ilvG 4242418..4244064 (+) 1647 WP_049011329.1 acetolactate synthase 2 catalytic subunit -
  FOB54_RS20190 (FOB54_20195) ilvM 4244061..4244324 (+) 264 WP_012131119.1 acetolactate synthase 2 small subunit -
  FOB54_RS20195 (FOB54_20200) ilvE 4244342..4245271 (+) 930 WP_012131120.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55014.09 Da        Isoelectric Point: 7.6395

>NTDB_id=387793 FOB54_RS20175 WP_049011333.1 4240308..4241828(-) (comM) [Citrobacter koseri strain FDAARGOS_646]
MSLSIVHTRAALGVNAPPITIEVHISNGLPGLTMVGLPETTVKEARDRVRSAIINSGYEFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLTTNKLNEYELVGELALTGALRGVPGAISSATEAIRAGRHIIVAKENTAEVGLISGEGCLIADHL
QTVCAFLEGKRDLEKPVSTDSDACLLHDDLSDVIGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPSLSDK
EALESAAILSLVNADTVQRQWKRRPFRSPHHSASLTAMVGGGSIPAPGEISLAHNGILFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLIAAMNPSPTGHYQGNHNRCSPEQTLRYLSRLSGPFLDRFDLSLEIPLPPPGILSQAAVKG
EDSATVKVRVISARKRQYERQGKLNAHLDSQGIRKYCSLHSDDAHWLEETLIHLGLSIRAWQRLLKVARTIADLEQTENI
TRLHLQEAVGYRAIDRLLIHLQKLLT

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=387793 FOB54_RS20175 WP_049011333.1 4240308..4241828(-) (comM) [Citrobacter koseri strain FDAARGOS_646]
ATGTCACTGTCGATTGTTCACACACGCGCCGCACTTGGCGTTAATGCGCCGCCAATAACCATCGAGGTGCATATCAGTAA
TGGCCTGCCGGGTTTAACAATGGTTGGGCTACCTGAAACGACGGTAAAGGAGGCCCGGGATCGGGTTCGCAGCGCAATCA
TCAATAGCGGGTATGAATTTCCGGCGAAGAAAATCACCATTAATCTGGCCCCGGCAGATTTACCCAAAGAGGGCGGAAGA
TATGATTTACCTATCGCAATTGCGCTTCTGGCGGCGTCAGAGCAACTTACAACAAATAAGCTTAATGAATATGAACTGGT
AGGCGAACTGGCCCTTACAGGTGCGTTACGTGGCGTTCCAGGCGCGATATCCAGTGCAACCGAGGCGATTCGGGCAGGCA
GACATATCATTGTTGCAAAAGAGAATACGGCGGAAGTTGGGCTAATCAGCGGGGAGGGATGCCTGATTGCAGATCATCTG
CAAACGGTATGCGCATTTCTGGAAGGGAAACGTGATCTTGAGAAACCAGTCTCTACCGATTCTGACGCCTGTTTACTGCA
TGACGATCTCAGTGATGTTATCGGTCAGGAACAGGGGAAACGAGGCCTGGAAATCACGGCCGCAGGAGGGCACAACCTGC
TGCTGATAGGCCCACCAGGTACGGGAAAAACCATGCTGGCCAGCCGCATTAATGGGCTACTGCCATCATTAAGCGACAAA
GAAGCGCTGGAAAGTGCGGCGATTCTCAGCCTGGTGAACGCCGATACGGTACAAAGGCAGTGGAAACGGCGTCCTTTCCG
CTCGCCTCATCACAGCGCGTCATTAACGGCAATGGTGGGGGGAGGTTCAATACCCGCGCCAGGAGAAATATCGCTGGCGC
ACAACGGTATTTTGTTTCTGGATGAACTGCCTGAGTTTGAACGACGCACGCTGGATGCGCTACGTGAACCTATTGAGTCT
GGTCAGATACACCTTTCGCGCACCCGGGCAAAGATCACCTATCCTGCGCGCTTCCAACTGATTGCAGCAATGAATCCCAG
CCCGACCGGTCACTATCAGGGGAACCATAATCGCTGTAGCCCGGAACAGACGTTGCGCTACCTCAGCCGTTTATCCGGCC
CCTTTCTCGATCGATTCGATCTCTCGCTCGAAATTCCCCTGCCACCGCCCGGTATACTCAGCCAGGCAGCGGTGAAAGGC
GAGGACAGCGCTACAGTGAAAGTACGGGTGATATCCGCACGGAAACGCCAGTACGAACGACAGGGGAAGCTAAACGCCCA
TCTGGACAGCCAGGGTATACGAAAGTACTGCTCTCTACACAGTGATGATGCGCACTGGCTGGAGGAGACGCTGATACATC
TGGGATTGTCTATACGAGCCTGGCAGCGCTTACTGAAGGTTGCCCGTACCATTGCCGATCTGGAACAAACGGAGAATATT
ACGCGCCTGCATTTGCAGGAGGCTGTGGGCTATCGGGCAATAGACAGACTACTGATTCATTTACAAAAACTACTGACGTA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

59.363

99.209

0.589
  comM Haemophilus influenzae Rd KW20

58.203

100

0.589
  comM Glaesserella parasuis strain SC1401

58.546

100

0.589
  comM Vibrio campbellii strain DS40M4

58.367

99.209

0.579
  comM Legionella pneumophila str. Paris

47.4

98.814

0.468
  comM Legionella pneumophila strain ERS1305867

47.4

98.814

0.468
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.135

99.407

0.439

Multiple sequence alignment