Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   FOB53_RS15155 Genome accession   NZ_CP044076
Coordinates   3050134..3051660 (-) Length   508 a.a.
NCBI ID   WP_150376239.1    Uniprot ID   -
Organism   Providencia stuartii strain FDAARGOS_645     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3045134..3056660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB53_RS15140 (FOB53_15140) - 3047619..3048413 (-) 795 Protein_2713 transposase -
  FOB53_RS15145 (FOB53_15145) hdfR 3048654..3049499 (-) 846 WP_004915423.1 HTH-type transcriptional regulator HdfR -
  FOB53_RS15150 (FOB53_15150) - 3049611..3049949 (+) 339 WP_004915426.1 DUF413 domain-containing protein -
  FOB53_RS15155 (FOB53_15155) comM 3050134..3051660 (-) 1527 WP_150376239.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  FOB53_RS15160 (FOB53_15160) ilvL 3052140..3052241 (+) 102 WP_071599630.1 ilv operon leader peptide -
  FOB53_RS15165 (FOB53_15165) ilvG 3052375..3054021 (+) 1647 WP_004915430.1 acetolactate synthase 2 catalytic subunit -
  FOB53_RS15170 (FOB53_15170) ilvM 3054018..3054287 (+) 270 WP_004915433.1 acetolactate synthase 2 small subunit -
  FOB53_RS15175 (FOB53_15175) - 3054300..3055226 (+) 927 WP_004915437.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55540.26 Da        Isoelectric Point: 8.7576

>NTDB_id=387497 FOB53_RS15155 WP_150376239.1 3050134..3051660(-) (comM) [Providencia stuartii strain FDAARGOS_645]
MALAIVYTRASIGMNAPLVTVEAHISNGLPGLTLVGLPETAVKESRDRVRSALLNSGFEFPAKKMTINLAPADLPKEGGR
YDLAIAIAILASSGQVPTKILHQYEFLGELALSGHIRHVNGAIPAALAALTQKRQLVLSSENQYELNLLPDNSVKFAGTL
LELCHFLYEKMTLSGNFHPTEIPEPPICDGNISDIIGQDQGKRALEICASGGHNLLLLGPPGTGKTMLASRLKTLLPSLT
PQEALEVASIHSLCHSSDLTSPWPPRPFRAPHHSASMAALIGGGSLPKPGEISLAHNGILFLDELPEFSRSVLDALREPL
ESRQVIISRAKAKVCFPANFQLIAALNPSPTGQYQGDYCRSSSTKILRYLSRVSGPFLDRFDLSIEIPLLPLGTLSHQQY
QSENSEQIRARVILAREIQMKRMGKLNSQLTARETTNLCQLTSKDSLFLEHALNKLGLSIRAWHRILRVARTIADLQNTN
NIEKPHLLEALGYRAMDKLLLHLQKQVS

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=387497 FOB53_RS15155 WP_150376239.1 3050134..3051660(-) (comM) [Providencia stuartii strain FDAARGOS_645]
ATGGCATTAGCAATTGTGTATACAAGAGCATCGATAGGAATGAATGCGCCACTGGTTACTGTTGAAGCACATATTAGTAA
TGGGCTACCTGGATTGACACTTGTAGGTTTACCTGAAACGGCTGTAAAAGAATCGAGAGATAGAGTACGGAGCGCATTAT
TAAACAGCGGTTTTGAATTCCCTGCAAAAAAAATGACGATTAACTTAGCCCCTGCCGATCTCCCGAAAGAAGGGGGACGT
TACGATCTTGCGATAGCAATCGCTATCTTAGCGTCATCAGGCCAAGTGCCTACAAAAATACTTCATCAGTATGAGTTTCT
CGGTGAACTCGCTTTGTCTGGTCATATTCGCCATGTGAATGGTGCTATCCCTGCCGCACTCGCGGCATTAACACAAAAAA
GGCAACTCGTTCTTTCGTCTGAAAATCAATATGAGCTGAATTTATTACCTGATAATAGTGTTAAGTTTGCAGGAACATTA
TTAGAACTTTGTCATTTTTTATACGAGAAAATGACATTATCAGGTAATTTCCATCCGACCGAAATCCCTGAGCCCCCCAT
TTGCGACGGGAATATTAGCGATATTATTGGCCAAGACCAGGGAAAAAGAGCGTTAGAGATCTGTGCAAGTGGTGGGCACA
ACTTATTGTTATTAGGCCCTCCTGGCACAGGAAAAACGATGCTAGCAAGTCGCCTAAAAACATTACTACCATCCCTAACG
CCACAGGAAGCCCTAGAAGTCGCCTCTATACATAGCCTATGCCATTCAAGCGATTTAACTTCTCCTTGGCCTCCTAGGCC
CTTTAGAGCTCCTCACCATAGCGCGTCAATGGCAGCACTCATTGGTGGAGGGAGCCTTCCTAAACCCGGTGAAATATCAT
TAGCCCATAATGGCATTTTATTTCTGGATGAATTGCCTGAGTTTAGCCGCTCTGTACTTGACGCATTACGTGAGCCACTT
GAATCAAGGCAAGTTATTATTTCCCGCGCTAAAGCAAAAGTGTGTTTCCCAGCCAACTTTCAACTCATCGCCGCACTGAA
CCCAAGCCCTACAGGCCAATATCAAGGTGATTACTGCCGAAGCTCCTCCACGAAAATCTTACGCTACTTATCACGCGTTT
CAGGTCCTTTTCTTGATCGATTTGATCTGTCTATTGAAATACCGCTGCTTCCGTTGGGTACACTCAGTCATCAACAGTAT
CAAAGCGAAAATAGTGAGCAAATCCGCGCTAGAGTCATACTTGCAAGAGAGATACAAATGAAAAGAATGGGGAAACTCAA
TAGCCAATTAACCGCCAGAGAAACGACAAACCTATGCCAACTTACATCCAAAGATTCACTTTTTTTGGAGCATGCCTTAA
ACAAACTTGGGTTATCGATACGTGCTTGGCATCGCATTTTGAGAGTCGCTCGAACTATTGCCGACTTACAAAATACCAAT
AATATCGAAAAACCCCATCTTCTCGAAGCTCTCGGTTATAGAGCGATGGATAAGTTATTGCTTCATTTGCAAAAACAAGT
AAGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-494)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

60.672

99.606

0.604
  comM Glaesserella parasuis strain SC1401

60.314

100

0.604
  comM Haemophilus influenzae Rd KW20

59.883

100

0.602
  comM Vibrio campbellii strain DS40M4

59.055

100

0.591
  comM Legionella pneumophila str. Paris

48.104

98.622

0.474
  comM Legionella pneumophila strain ERS1305867

48.104

98.622

0.474
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.706

100

0.449

Multiple sequence alignment