Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   FOB65_RS23195 Genome accession   NZ_CP044074
Coordinates   4685156..4687405 (+) Length   749 a.a.
NCBI ID   WP_081875221.1    Uniprot ID   -
Organism   Pseudomonas oryzihabitans strain FDAARGOS_657     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4680156..4692405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB65_RS23175 (FOB65_23175) pilM 4682335..4683399 (+) 1065 WP_027598915.1 pilus assembly protein PilM Machinery gene
  FOB65_RS23180 (FOB65_23180) - 4683400..4683990 (+) 591 WP_108582365.1 PilN domain-containing protein -
  FOB65_RS23185 (FOB65_23185) pilO 4683987..4684640 (+) 654 WP_007161624.1 type 4a pilus biogenesis protein PilO -
  FOB65_RS23190 (FOB65_23190) - 4684637..4685155 (+) 519 WP_027602907.1 pilus assembly protein PilP -
  FOB65_RS23195 (FOB65_23195) pilQ 4685156..4687405 (+) 2250 WP_081875221.1 type IV pilus secretin PilQ Machinery gene
  FOB65_RS23200 (FOB65_23200) aroK 4687411..4687929 (+) 519 WP_007161627.1 shikimate kinase AroK -
  FOB65_RS23205 (FOB65_23205) aroB 4687982..4689076 (+) 1095 WP_007161628.1 3-dehydroquinate synthase -
  FOB65_RS23210 (FOB65_23210) - 4689095..4690693 (+) 1599 WP_074584071.1 AAA family ATPase -

Sequence

Protein


Download         Length: 749 a.a.        Molecular weight: 79902.63 Da        Isoelectric Point: 8.8464

>NTDB_id=387476 FOB65_RS23195 WP_081875221.1 4685156..4687405(+) (pilQ) [Pseudomonas oryzihabitans strain FDAARGOS_657]
MGGASTVNTTIAGRLGLGLALLLSSLAGQALAADLQALNVASLPGDRIELKLTFDQPVPVPKGYTIEQPARIALDLPGVA
NKLGTKSRELGNGNARSVTVVEAGNRTRLIINLTNLASYDTRADGRNLFVTIGGTAGRQTASAQANLTPNLPRAAAPTTV
TAPSSAPLPGAIARTPLPPTQATSTVAAMTAPRPQLRGKAIRHIDFQRGPQGEGNVVIDLSETGINPDIQEQGGKIRLTF
AGTQLPEELRVRLDVKDFATPVQFVNASADSGGASIVIEPTGTYDYLAYQTNNRLTLSVKPLTTEEKEKRAADRFTYTGE
KLSLNFQDIDVRSVLQLIADFTNLNLVASDTVQGNITLRLQNVPWDQALDLILKTKGLDKRQIGNVLLVAPADEIAARER
QELESQKQIQQLAPLRRDLIQVNYAKAADIAKLFQSVTSADKTADERGSISVDERTNSIIAYQTQNRLDELRRIVSQLDI
PVRQVMIEARLVEANVDYSKQLGVRWGGNASSGNFAVYGKDGATTVDPTTGQAFLPGTSTVGNFTSTNGVAPTPFVDMGV
SGSTSGIGIGFMVGGKMLDLQLSALQSSGNGEIISQPKVVTSDKETAKILRGTEIPYQEASSSGATSTSFKQAALSLEVT
PQITPDNRIIMEVKVNKDAPDYQNALNGVPPISKNEVNAKVLVSDGETIVLGGVFSNTQTKSTTKVPMLGDIPYVGRLFR
RDSVTDSKVELLIFLTPRIMNNQAIAVGR

Nucleotide


Download         Length: 2250 bp        

>NTDB_id=387476 FOB65_RS23195 WP_081875221.1 4685156..4687405(+) (pilQ) [Pseudomonas oryzihabitans strain FDAARGOS_657]
ATGGGCGGGGCGAGCACTGTGAACACTACTATCGCGGGACGACTGGGGCTGGGCCTGGCCCTGCTGCTGAGCAGCCTGGC
CGGCCAGGCTCTGGCAGCCGATCTGCAGGCCTTGAACGTCGCCTCCCTGCCCGGGGATCGCATCGAACTCAAGCTGACCT
TCGATCAGCCGGTGCCGGTGCCCAAGGGCTACACCATCGAGCAGCCGGCGCGCATCGCCCTGGACCTGCCCGGCGTCGCC
AACAAGCTCGGTACCAAGAGCCGTGAGCTGGGCAATGGCAATGCCCGCAGCGTGACGGTGGTCGAGGCGGGCAACCGCAC
CCGCCTGATCATCAACCTCACCAATCTGGCCAGCTACGACACCCGGGCCGACGGTCGCAACCTGTTCGTCACCATCGGGG
GCACCGCCGGTCGCCAGACCGCCAGCGCCCAGGCCAACCTGACGCCCAACCTGCCGCGCGCCGCTGCGCCGACCACCGTG
ACCGCGCCGTCGTCCGCTCCCTTGCCCGGCGCGATCGCCCGCACGCCGCTGCCGCCGACCCAAGCCACCTCTACCGTGGC
GGCCATGACCGCGCCGCGGCCGCAATTGCGCGGCAAGGCGATCCGCCATATCGATTTCCAGCGGGGGCCCCAGGGCGAGG
GCAACGTGGTCATCGACCTGAGCGAGACCGGCATCAATCCGGACATCCAGGAGCAGGGCGGCAAGATTCGCCTGACCTTT
GCCGGTACCCAGCTGCCCGAAGAGCTGCGGGTACGGCTGGACGTCAAGGACTTCGCTACCCCCGTGCAGTTCGTCAACGC
CTCCGCTGACAGCGGCGGGGCGTCCATCGTCATCGAGCCGACCGGTACCTACGACTACCTGGCCTACCAGACCAACAACC
GTCTGACCCTGAGCGTCAAGCCGCTCACCACCGAGGAAAAGGAAAAGCGCGCAGCCGATCGCTTCACCTATACCGGCGAG
AAGCTGTCGCTGAACTTCCAGGACATCGATGTCCGCTCGGTGCTGCAGCTGATCGCCGACTTCACCAATCTCAACCTGGT
GGCGAGCGACACCGTGCAGGGCAACATCACCCTGCGCCTGCAGAACGTGCCCTGGGACCAGGCGCTGGATCTGATCCTCA
AGACCAAGGGGCTGGACAAGCGCCAGATCGGCAACGTGCTGCTGGTGGCCCCGGCCGACGAGATCGCCGCCCGCGAACGT
CAGGAGCTGGAGTCCCAGAAGCAGATCCAGCAACTGGCCCCCTTGCGTCGCGACCTGATTCAGGTCAACTACGCCAAGGC
CGCCGACATCGCCAAGCTGTTCCAGTCGGTGACCAGTGCCGACAAGACCGCCGACGAGCGCGGCTCCATCTCGGTGGACG
AACGCACCAACAGCATCATCGCCTACCAGACCCAGAATCGCCTGGATGAACTGCGCCGCATCGTCTCGCAGCTGGACATC
CCGGTGCGCCAGGTGATGATCGAGGCGCGGCTGGTGGAGGCCAACGTCGACTACAGCAAGCAGCTGGGAGTGCGCTGGGG
CGGTAACGCCAGTTCGGGCAACTTCGCGGTCTATGGCAAGGACGGCGCCACTACGGTCGACCCCACTACCGGTCAGGCCT
TCCTGCCGGGTACCAGTACCGTGGGTAACTTCACCTCTACCAATGGCGTCGCGCCCACGCCTTTCGTCGACATGGGCGTT
TCCGGCAGCACCTCGGGTATCGGCATCGGCTTCATGGTCGGCGGCAAGATGCTCGACCTGCAGCTTTCGGCCCTGCAGTC
CAGCGGCAATGGCGAGATCATCTCCCAGCCCAAGGTGGTGACCTCGGACAAGGAGACCGCCAAGATCCTGCGCGGTACCG
AGATCCCCTACCAGGAAGCCAGTTCCAGCGGTGCCACCAGCACCAGCTTCAAGCAGGCCGCCCTGTCGCTGGAGGTCACA
CCGCAGATCACTCCGGACAACCGCATCATCATGGAGGTCAAGGTCAACAAGGATGCCCCTGACTACCAGAACGCCCTCAA
CGGCGTGCCGCCGATCAGCAAGAACGAGGTCAATGCCAAGGTACTGGTGAGCGATGGCGAGACCATCGTACTGGGCGGGG
TGTTCTCCAACACCCAGACCAAGTCCACCACCAAGGTGCCGATGCTGGGCGACATTCCCTATGTCGGCCGACTGTTCCGC
CGGGATTCGGTCACCGACAGCAAAGTCGAGCTGCTGATCTTCCTCACGCCGCGTATCATGAACAACCAGGCGATAGCGGT
TGGTCGATGA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(584-740)

Secretin and TonB N terminus short domain (STN)

(345-391)

AMIN domain (AMIN)

(47-132)

Bacterial type II/III secretion system short domain (Secretin_N)

(420-484)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

70.285

98.398

0.692
  comQ Acinetobacter baylyi ADP1

40.854

100

0.409
  pilQ Acinetobacter baumannii D1279779

39.474

100

0.401
  pilQ Acinetobacter baumannii strain A118

39.474

100

0.401

Multiple sequence alignment