Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   FOB71_RS07880 Genome accession   NZ_CP044069
Coordinates   117800..119323 (-) Length   507 a.a.
NCBI ID   WP_026050370.1    Uniprot ID   -
Organism   Vibrio vulnificus strain FDAARGOS_663     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 112800..124323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB71_RS07860 (FOB71_07855) - 114087..115073 (+) 987 WP_017419860.1 serine/threonine protein kinase -
  FOB71_RS07865 (FOB71_07860) - 115106..115711 (+) 606 WP_017419859.1 thiol:disulfide interchange protein DsbA/DsbL -
  FOB71_RS07870 (FOB71_07865) - 115763..116644 (-) 882 WP_017419858.1 acyltransferase -
  FOB71_RS07875 (FOB71_07870) - 116787..117761 (+) 975 WP_017419857.1 DUF2860 domain-containing protein -
  FOB71_RS07880 (FOB71_07875) comM 117800..119323 (-) 1524 WP_026050370.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  FOB71_RS07885 (FOB71_07880) ilvG 119793..121439 (+) 1647 WP_017419855.1 acetolactate synthase 2 catalytic subunit -
  FOB71_RS07890 (FOB71_07885) ilvM 121451..121735 (+) 285 WP_011079065.1 acetolactate synthase 2 small subunit -
  FOB71_RS07895 (FOB71_07890) ilvE 121747..122685 (+) 939 WP_011079064.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54699.85 Da        Isoelectric Point: 8.8059

>NTDB_id=387365 FOB71_RS07880 WP_026050370.1 117800..119323(-) (comM) [Vibrio vulnificus strain FDAARGOS_663]
MGLAIIHSRASVGVEAPSVSVEVHISNGLPGFTLVGLPETTVKESKDRVRSAIVNSNFQFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQISVQFLQQHEFVGELALSGELRAVKGVLPAALAAKGVSRSLVVPHANGDQAALVGKNMHKSACSL
IEVCAHLCGQQALSLHQTKQALQPSSHGRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLRDLLPEMSE
EEAMETAAVASLTQSDINEHNWKQRPFRAPHHSSSMAALVGGGTIPRPGEISLAHNGLLFLDEMPEFERKVLDSMREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQARANPQAILRYLGRLSGPLLDRFDMSLEIPALPKGTLAEGGDR
GEPTAVVKERVAQARERMQLRNGKVNALLGSREIEAFCPLSKQDAEFLETALHRLGLSIRAYHRIIKVARTIADLEGAPQ
ITRAHLAEALGYRAMDRLLKQLTLQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=387365 FOB71_RS07880 WP_026050370.1 117800..119323(-) (comM) [Vibrio vulnificus strain FDAARGOS_663]
ATGGGGTTGGCGATTATTCATAGCCGTGCCAGTGTGGGCGTCGAAGCGCCTTCCGTGAGCGTGGAAGTGCACATCAGTAA
CGGCTTACCGGGATTTACCTTGGTTGGGTTGCCGGAAACCACCGTAAAGGAATCAAAAGATCGCGTACGCAGTGCGATCG
TCAACAGCAACTTTCAATTTCCTGCTAAGCGGATCACCGTTAACTTGGCGCCCGCCGATCTGCCCAAAGAAGGGGGGCGC
TTTGATTTGCCGATCGCACTCGGTATTTTAGCTGCTTCTGAGCAGATCTCCGTTCAATTTCTCCAGCAACATGAATTTGT
CGGTGAGTTAGCCTTAAGTGGTGAGCTACGAGCGGTGAAAGGGGTGTTGCCAGCTGCTCTTGCCGCCAAAGGGGTCTCCC
GCAGTTTGGTGGTACCTCATGCGAATGGGGATCAAGCCGCCCTGGTGGGCAAGAACATGCATAAGTCGGCGTGCTCGCTG
ATTGAAGTTTGTGCCCATTTATGTGGCCAGCAAGCCCTGTCATTACATCAAACCAAGCAAGCATTGCAGCCCTCATCACA
TGGTCGAGATTTACAAGACATCATTGGTCAACAACAAGGAAAGCGAGCGCTAGAAATTGCAGCGGCAGGCAATCACAATT
TGTTGTTTTTAGGGCCTCCTGGGACCGGAAAAACCATGCTGGCGTCACGTTTGCGAGATTTGTTGCCTGAAATGAGTGAG
GAAGAGGCGATGGAAACGGCAGCGGTGGCTTCTTTAACACAAAGCGATATCAACGAGCACAATTGGAAGCAGCGGCCATT
TCGCGCGCCGCATCACTCAAGTTCTATGGCGGCGCTGGTGGGCGGTGGAACCATTCCGCGTCCCGGAGAAATCTCACTTG
CCCACAACGGCTTACTGTTTTTGGATGAGATGCCGGAATTTGAGCGCAAAGTGCTCGATTCAATGCGTGAACCGCTAGAG
TCTGGGGAAATCATCATTTCACGAGCACAAGGTAAAACTCGTTTTCCTGCTCGCTTTCAGTTGGTCGGTGCGTTGAATCC
GAGCCCAACGGGCTATTACGAAGGGAACCAAGCTCGCGCCAATCCTCAGGCGATTTTGCGTTATTTAGGCCGTTTATCGG
GCCCACTGTTGGATCGTTTTGATATGTCACTCGAGATCCCTGCATTACCCAAAGGTACATTGGCAGAAGGGGGTGACCGA
GGTGAACCAACGGCGGTGGTGAAGGAGCGAGTGGCGCAGGCGAGAGAGCGTATGCAGCTTCGTAATGGCAAGGTTAATGC
TCTGTTAGGCAGCCGAGAAATCGAAGCGTTTTGCCCATTGAGTAAGCAAGATGCCGAGTTTCTTGAAACGGCGTTGCACC
GTTTAGGATTATCGATTCGCGCTTATCACCGCATCATTAAAGTGGCGCGAACCATTGCCGATTTAGAAGGCGCACCTCAG
ATAACACGTGCACACTTAGCCGAAGCACTCGGTTATCGGGCGATGGATCGCTTGCTCAAACAGTTAACTCTGCAAGCGGT
TTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

88.363

100

0.884
  comM Vibrio cholerae strain A1552

84.221

100

0.842
  comM Haemophilus influenzae Rd KW20

65.286

100

0.653
  comM Glaesserella parasuis strain SC1401

62.648

99.803

0.625
  comM Legionella pneumophila str. Paris

50.403

97.83

0.493
  comM Legionella pneumophila strain ERS1305867

50.403

97.83

0.493
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.11

100

0.432

Multiple sequence alignment