Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   FOB72_RS13310 Genome accession   NZ_CP044065
Coordinates   2899457..2900995 (+) Length   512 a.a.
NCBI ID   WP_150372946.1    Uniprot ID   A0A5P2H747
Organism   Cupriavidus pauculus strain FDAARGOS_664     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2894457..2905995
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB72_RS13290 (FOB72_13285) amt 2895798..2897324 (-) 1527 WP_150372943.1 ammonium transporter -
  FOB72_RS13295 (FOB72_13290) - 2897356..2897694 (-) 339 WP_109582230.1 P-II family nitrogen regulator -
  FOB72_RS13300 (FOB72_13295) - 2897749..2898546 (-) 798 WP_150372944.1 TorF family putative porin -
  FOB72_RS13305 (FOB72_13300) - 2899067..2899336 (+) 270 WP_150372945.1 accessory factor UbiK family protein -
  FOB72_RS13310 (FOB72_13305) comM 2899457..2900995 (+) 1539 WP_150372946.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  FOB72_RS13315 (FOB72_13310) - 2901259..2901900 (-) 642 WP_150372947.1 LysE family transporter -
  FOB72_RS13320 (FOB72_13315) - 2901927..2902496 (-) 570 WP_150372948.1 hypothetical protein -
  FOB72_RS13325 (FOB72_13320) - 2902660..2903199 (+) 540 WP_411859797.1 thioredoxin -
  FOB72_RS13330 (FOB72_13325) - 2903324..2903848 (+) 525 WP_150372949.1 TlpA disulfide reductase family protein -

Sequence

Protein


Download         Length: 512 a.a.        Molecular weight: 54649.64 Da        Isoelectric Point: 7.5967

>NTDB_id=387357 FOB72_RS13310 WP_150372946.1 2899457..2900995(+) (comM) [Cupriavidus pauculus strain FDAARGOS_664]
MSLAVLRSRALTGIDAPPVSVEIHLANGLPAFHIVGLAETEVREARERVRAALLHCAFDFPSRRITVNLAPADLPKDSGR
FDLPIALGILAASGQLPADRLDDVEFIGELSLSGELRPVRGALAMAMGVAQGNALRARFGSDPRAFVVPAGNGPEAALID
GLRVLPADTLAEVCAHLAGQPEHQIAPARAPALAARPAEGPDLVDVRGQLQARRAMEIAAAGQHSALLVGPPGTGKSMLA
QRFAGLLPPMTHEEALEAAAVSSLTAAGFQSSAWGRRPFRAPHHTASAAALVGGGGNPRPGEISLAHHGVLFLDELPEFE
RRVLEVLREPLETGHITISRATAHADFPARFQFIAAMNPCPCGYLGHASRPCRCTPDQIRRYQSRVSGPLLDRIDLQIEV
PAQHHEEMLDGPVGETTEAVRARVIVARERQLARQGKPNGDLGGREIDALCPLEAAARELLRAAMHKLAWSARAYFRVLK
VARTVADLDGTDTLAVRHVAEAIQYRRALRSG

Nucleotide


Download         Length: 1539 bp        

>NTDB_id=387357 FOB72_RS13310 WP_150372946.1 2899457..2900995(+) (comM) [Cupriavidus pauculus strain FDAARGOS_664]
ATGAGCCTCGCCGTATTGCGCAGCCGCGCGCTCACCGGCATCGACGCGCCGCCGGTATCGGTGGAAATCCACCTGGCCAA
CGGCCTGCCCGCGTTCCATATCGTCGGACTGGCCGAAACCGAAGTCCGGGAGGCGCGCGAACGTGTGCGGGCCGCCCTGC
TCCATTGCGCGTTCGACTTTCCCAGCCGGCGCATCACCGTGAACCTGGCGCCGGCCGATCTGCCGAAGGATTCCGGGCGC
TTCGATCTGCCGATCGCGCTCGGCATTCTCGCGGCGAGCGGACAGTTGCCGGCAGACCGCCTCGACGATGTCGAGTTCAT
TGGCGAGCTGTCGCTGTCCGGGGAACTGCGGCCCGTGCGCGGGGCGCTGGCCATGGCGATGGGCGTCGCGCAAGGGAACG
CGCTGCGCGCGCGGTTCGGTTCGGACCCGCGCGCGTTCGTGGTGCCGGCCGGCAATGGCCCGGAGGCCGCCCTGATCGAC
GGTCTGCGTGTATTGCCGGCCGATACGCTGGCCGAGGTCTGCGCGCATCTGGCTGGCCAGCCGGAACACCAGATCGCCCC
GGCGCGCGCGCCGGCACTCGCCGCGCGCCCGGCGGAAGGTCCCGATCTGGTGGATGTACGCGGCCAGTTGCAGGCGCGTC
GCGCCATGGAGATTGCCGCGGCTGGCCAGCATTCGGCGCTGCTCGTGGGACCGCCGGGGACCGGCAAATCGATGCTCGCC
CAGCGATTCGCGGGGCTGCTGCCGCCGATGACCCACGAGGAGGCGCTGGAGGCTGCGGCGGTTTCGAGCCTGACGGCGGC
CGGATTCCAGTCATCGGCGTGGGGCCGCCGGCCGTTCCGCGCGCCGCACCATACGGCCTCGGCGGCGGCGCTCGTGGGCG
GCGGCGGCAATCCGCGGCCCGGCGAGATTTCCCTCGCGCATCATGGGGTGCTGTTTCTCGACGAGCTTCCCGAGTTCGAG
CGCAGGGTGCTCGAGGTCCTGCGCGAGCCGCTGGAGACGGGCCACATCACGATCTCTCGCGCGACCGCGCATGCGGACTT
TCCCGCGCGCTTCCAGTTCATCGCGGCGATGAATCCTTGTCCATGCGGGTATCTCGGTCATGCGTCGCGGCCGTGCCGGT
GCACGCCGGACCAGATTCGCCGCTATCAGTCGCGCGTATCCGGTCCGCTGCTGGACCGCATCGACCTGCAGATCGAGGTG
CCCGCGCAGCATCACGAAGAGATGCTCGACGGGCCGGTGGGCGAGACCACCGAGGCAGTGCGCGCGCGAGTGATCGTGGC
GCGCGAGCGGCAGCTTGCGCGGCAGGGCAAACCGAATGGCGACCTCGGGGGGCGCGAGATCGATGCGCTGTGTCCGCTCG
AAGCGGCCGCGCGGGAACTGCTGCGCGCCGCGATGCACAAGCTGGCGTGGTCGGCGCGTGCCTATTTCCGCGTGCTCAAG
GTCGCGCGGACCGTCGCCGACCTCGATGGCACGGACACGCTGGCGGTGCGGCATGTGGCGGAAGCGATTCAATACCGGCG
GGCGTTGCGGAGCGGGTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(414-506)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(202-407)

Subunit ChlI of Mg-chelatase (ChlI)

(21-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5P2H747

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.043

99.023

0.535
  comM Vibrio campbellii strain DS40M4

53.057

99.023

0.525
  comM Haemophilus influenzae Rd KW20

49.708

100

0.498
  comM Glaesserella parasuis strain SC1401

49.902

99.414

0.496
  comM Legionella pneumophila str. Paris

48.924

99.805

0.488
  comM Legionella pneumophila strain ERS1305867

48.924

99.805

0.488
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.578

100

0.426

Multiple sequence alignment