Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HHJ31_RS15475 Genome accession   NZ_CP051719
Coordinates   3243301..3243837 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain SCU-116     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3238301..3248837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHJ31_RS15455 (HHJ31_15460) aphA 3238590..3239303 (+) 714 WP_001226933.1 acid phosphatase AphA -
  HHJ31_RS15460 (HHJ31_15465) yjbQ 3239414..3239830 (+) 417 WP_000270369.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  HHJ31_RS15465 (HHJ31_15470) yjbR 3239834..3240190 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  HHJ31_RS15470 (HHJ31_15475) uvrA 3240225..3243047 (-) 2823 WP_000357763.1 excinuclease ABC subunit UvrA Machinery gene
  HHJ31_RS15475 (HHJ31_15480) ssb 3243301..3243837 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HHJ31_RS15480 (HHJ31_15485) yjcB 3243936..3244217 (-) 282 WP_001296643.1 YjcB family protein -
  HHJ31_RS15485 (HHJ31_15490) pdeC 3244646..3246232 (+) 1587 WP_001314348.1 c-di-GMP phosphodiesterase PdeC -
  HHJ31_RS15490 (HHJ31_15495) soxS 3246235..3246558 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  HHJ31_RS15495 (HHJ31_15500) soxR 3246644..3247108 (+) 465 WP_000412431.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=387351 HHJ31_RS15475 WP_000168305.1 3243301..3243837(+) (ssb) [Escherichia coli strain SCU-116]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=387351 HHJ31_RS15475 WP_000168305.1 3243301..3243837(+) (ssb) [Escherichia coli strain SCU-116]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCTGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTATACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489