Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FOB72_RS07860 Genome accession   NZ_CP044065
Coordinates   1727959..1729326 (-) Length   455 a.a.
NCBI ID   WP_150372014.1    Uniprot ID   -
Organism   Cupriavidus pauculus strain FDAARGOS_664     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1722959..1734326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB72_RS07840 (FOB72_07835) - 1723313..1723798 (-) 486 WP_150372010.1 disulfide bond formation protein B -
  FOB72_RS07845 (FOB72_07840) oxlT 1723958..1725244 (-) 1287 WP_150372011.1 oxalate/formate MFS antiporter -
  FOB72_RS07850 (FOB72_07845) - 1725331..1726905 (-) 1575 WP_150372012.1 gamma-glutamyltransferase family protein -
  FOB72_RS07855 (FOB72_07850) - 1727216..1727959 (-) 744 WP_150372013.1 GntR family transcriptional regulator -
  FOB72_RS07860 (FOB72_07855) radA 1727959..1729326 (-) 1368 WP_150372014.1 DNA repair protein RadA Machinery gene
  FOB72_RS07865 (FOB72_07860) alr 1729342..1730448 (-) 1107 WP_150372015.1 alanine racemase -
  FOB72_RS07870 (FOB72_07865) lplT 1730931..1732250 (+) 1320 WP_150372016.1 lysophospholipid transporter LplT -
  FOB72_RS07875 (FOB72_07870) - 1732291..1733460 (-) 1170 WP_150372017.1 DUF1853 family protein -
  FOB72_RS07880 (FOB72_07875) - 1733441..1734286 (-) 846 WP_411859816.1 uracil-DNA glycosylase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48307.56 Da        Isoelectric Point: 6.8199

>NTDB_id=387350 FOB72_RS07860 WP_150372014.1 1727959..1729326(-) (radA) [Cupriavidus pauculus strain FDAARGOS_664]
MAKIKTVYTCTECGGTTPRWQGQCPHCQQWNTLVESVADTGSTAARRFQPLAASAVVRKLSEIDAADVPRFSSGIDEFDR
VLGGGLVAGGVVLIGGDPGIGKSTLLLQALANLAGERRVLYVSGEESGAQIALRAQRLGVESPSLGLLPEIQLEKIQAAL
DAEKPEVAVIDSIQTLYSEALTSAPGSVAQVRECAAQLTRIAKSSGITIILVGHVTKEGSLAGPRVLEHIVDTVLYFEGD
THSSHRLIRAFKNRFGAVNELGVFAMTEKGLRGISNPSALFLSQHEESVPGSCVLVTQEGTRPLLVEVQALVDAAGSPNP
RRLAVGLEQNRLAMLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLSIHSSMRNKPLPRGLVVFGEVGLAGEI
RPSPRGQERLKEAAKLGFTVAVIPKANAPKQAIDGLEVIAVERIEQAIDRVRHLE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=387350 FOB72_RS07860 WP_150372014.1 1727959..1729326(-) (radA) [Cupriavidus pauculus strain FDAARGOS_664]
TTGGCCAAGATCAAGACTGTCTACACATGCACGGAATGCGGCGGCACCACGCCGCGCTGGCAGGGCCAGTGCCCGCATTG
CCAGCAATGGAACACGCTGGTCGAGAGCGTGGCCGATACGGGCTCCACGGCCGCGCGCCGGTTTCAGCCGCTGGCGGCCT
CGGCCGTCGTGCGCAAGCTGTCCGAGATCGATGCGGCCGATGTGCCGCGTTTCTCGAGCGGGATCGATGAATTCGACCGC
GTGCTCGGCGGCGGCCTCGTGGCCGGCGGCGTGGTGCTGATCGGCGGCGATCCCGGTATCGGCAAATCGACGCTGCTGCT
GCAGGCGCTGGCCAATCTGGCCGGCGAGCGCCGCGTGCTTTATGTGAGCGGCGAGGAATCGGGCGCGCAGATCGCGCTGC
GCGCGCAGCGGCTGGGCGTGGAAAGCCCGTCCCTGGGACTGCTGCCCGAGATCCAGCTGGAGAAGATCCAGGCCGCGCTG
GATGCGGAGAAGCCCGAAGTGGCGGTGATCGACTCGATCCAGACGCTGTATTCGGAGGCGCTGACCTCGGCACCGGGCTC
GGTGGCGCAGGTGCGCGAATGCGCGGCGCAGCTGACGCGCATTGCCAAGAGCAGCGGCATCACGATCATCCTCGTCGGCC
ACGTGACCAAGGAGGGCAGCCTCGCCGGTCCGCGCGTGCTCGAGCATATCGTCGATACGGTGCTGTATTTCGAAGGGGAC
ACGCATTCCTCGCACCGGTTGATCCGCGCGTTCAAGAACCGCTTTGGCGCGGTCAACGAACTGGGCGTGTTCGCGATGAC
GGAGAAGGGACTGCGCGGCATCAGCAATCCGTCCGCGCTGTTCCTGTCGCAGCATGAGGAATCGGTGCCCGGCTCGTGCG
TGCTCGTGACGCAGGAGGGCACGCGTCCGCTGCTGGTGGAGGTGCAGGCGCTGGTGGACGCCGCGGGCTCGCCGAATCCG
CGGCGGCTGGCGGTCGGTCTGGAGCAGAACCGGCTGGCGATGCTGCTGGCCGTGCTGCACCGGCATGCGGGCATCGCGTG
TTTCGATCAGGACGTGTTCCTCAACGCGGTGGGCGGGGTGAAGATCACCGAGCCGGCCGCCGACCTGGCCGTGCTGCTGT
CGATCCATTCGTCGATGCGCAACAAGCCGTTGCCGCGCGGCCTCGTCGTGTTCGGCGAGGTCGGGCTGGCCGGCGAGATT
CGTCCGAGCCCGCGCGGGCAGGAGCGCCTGAAGGAAGCGGCCAAGCTCGGTTTCACGGTGGCCGTGATTCCGAAGGCCAA
CGCGCCGAAGCAGGCCATCGACGGGCTCGAGGTGATCGCGGTGGAGCGCATCGAGCAGGCGATCGACCGCGTGCGGCACC
TCGAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(65-219)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.109

100

0.503
  radA Streptococcus mitis SK321

45.788

100

0.466
  radA Streptococcus pneumoniae D39

45.887

100

0.466
  radA Streptococcus pneumoniae TIGR4

45.887

100

0.466
  radA Streptococcus pneumoniae R6

45.887

100

0.466
  radA Streptococcus pneumoniae Rx1

45.887

100

0.466
  radA Streptococcus mitis NCTC 12261

45.671

100

0.464

Multiple sequence alignment