Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   FOB75_RS12555 Genome accession   NZ_CP044062
Coordinates   2484409..2485932 (-) Length   507 a.a.
NCBI ID   WP_020839877.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain FDAARGOS_667     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2479409..2490932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB75_RS12535 (FOB75_12535) - 2480691..2481677 (+) 987 WP_025516177.1 serine/threonine protein kinase -
  FOB75_RS12540 (FOB75_12540) - 2481712..2482314 (+) 603 WP_005454748.1 thiol:disulfide interchange protein DsbA/DsbL -
  FOB75_RS12545 (FOB75_12545) - 2482356..2483234 (-) 879 WP_020839879.1 acyltransferase -
  FOB75_RS12550 (FOB75_12550) - 2483396..2484352 (+) 957 WP_020839878.1 DUF2860 domain-containing protein -
  FOB75_RS12555 (FOB75_12555) comM 2484409..2485932 (-) 1524 WP_020839877.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  FOB75_RS12560 (FOB75_12560) ilvG 2486397..2488043 (+) 1647 WP_005461385.1 acetolactate synthase 2 catalytic subunit -
  FOB75_RS12565 (FOB75_12565) ilvM 2488054..2488338 (+) 285 WP_005378958.1 acetolactate synthase 2 small subunit -
  FOB75_RS12570 (FOB75_12570) ilvE 2488351..2489289 (+) 939 WP_015297538.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55006.06 Da        Isoelectric Point: 8.4861

>NTDB_id=387294 FOB75_RS12555 WP_020839877.1 2484409..2485932(-) (comM) [Vibrio parahaemolyticus strain FDAARGOS_667]
MGLAIIHSRASVGVQAPSVSVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIINSNFQFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQIATDRLKNYEFIGELALSGGLRPVKGVLPAALAASKVGRHLVVPHVNGDQAALVGKEQHKSAQSL
LEVCAELCGQHRLNLYQTPKRKTVEKHGRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
EEAMETASVASLTQSEINEHNWKSRPFRAPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDEMPEFDRKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQARTNPQAILRYLGRLSGPLLDRFDMSLEIPSLPKGTLAEGGDR
GEPTELVKERVSLARESMLNRNGKVNALLGSREIEAFCPLQKSDAEFLETALHRLGLSIRAYHRIIKVARTIADLEGAEQ
IERSHLAEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=387294 FOB75_RS12555 WP_020839877.1 2484409..2485932(-) (comM) [Vibrio parahaemolyticus strain FDAARGOS_667]
ATGGGGCTGGCAATCATTCATAGTCGGGCAAGTGTCGGGGTGCAAGCGCCGTCAGTTAGTGTGGAAGTGCATATCAGTAA
TGGCATGCCCGGCTTTACTCTCGTTGGGTTGCCGGAGACTACGGTAAAGGAATCCAAAGATCGTGTACGCAGTGCGATCA
TCAACTCAAATTTCCAGTTTCCAGCCAAGCGCATTACGGTCAATTTGGCCCCGGCGGATTTACCTAAAGAAGGCGGACGT
TTTGATTTGCCTATCGCATTGGGTATTTTGGCGGCTTCAGAGCAAATCGCGACAGATAGGCTCAAAAACTACGAATTTAT
TGGCGAATTAGCCCTGTCTGGAGGATTAAGACCTGTCAAAGGTGTGCTTCCTGCCGCGTTGGCTGCAAGCAAAGTAGGAC
GTCATTTGGTGGTGCCTCATGTCAATGGTGATCAAGCGGCGCTGGTGGGCAAAGAGCAACATAAGTCAGCGCAATCCTTA
CTTGAGGTGTGTGCGGAGTTATGTGGTCAGCATCGTCTCAATCTTTATCAAACTCCGAAGCGAAAAACGGTTGAAAAGCA
TGGTCGAGATCTACAAGACATCATTGGCCAGCAACAAGGCAAGCGTGCTCTAGAAATTGCGGCGGCTGGAAACCACAACC
TACTTTTCCTTGGTCCTCCTGGTACAGGAAAAACCATGCTGGCGTCGCGTTTATGCGACTTACTGCCGGAGATGAGCGAC
GAAGAAGCGATGGAAACGGCTTCAGTCGCATCACTGACGCAAAGTGAGATTAATGAGCACAACTGGAAGTCGCGTCCGTT
TCGTGCGCCGCACCATTCCAGTTCGATGGCGGCATTAGTTGGTGGTGGCTCGGTGCCAAGACCAGGTGAGATTTCTTTGG
CTCACAATGGGTTATTGTTCCTTGATGAAATGCCGGAGTTTGACCGTAAAGTGTTGGACTCGTTACGAGAACCACTGGAA
TCGGGTGAAATCATCATTTCACGCGCACAAGGAAAAACGCGTTTTCCTGCTCGTTTTCAGCTGGTGGGCGCGTTGAATCC
AAGCCCAACGGGCTATTACGAAGGGAATCAAGCGCGCACTAACCCTCAAGCTATTTTGCGTTACTTAGGTCGTTTATCGG
GACCGCTTCTCGACCGTTTTGATATGTCGTTAGAAATTCCATCCTTACCGAAAGGCACGTTGGCGGAAGGTGGTGACCGA
GGTGAACCCACAGAACTCGTCAAAGAGCGCGTCAGTCTTGCTCGTGAGAGCATGCTCAATCGAAACGGCAAAGTCAACGC
ACTGCTCGGCAGCCGTGAGATTGAGGCATTTTGCCCGTTGCAAAAAAGCGATGCGGAATTTCTCGAAACTGCACTACATC
GGCTGGGGTTATCGATTCGTGCCTATCATCGCATCATTAAAGTGGCTCGCACGATAGCGGATTTAGAAGGTGCTGAGCAG
ATTGAGCGTTCTCATTTGGCGGAAGCGCTCGGGTATCGCGCGATGGACCGATTGCTGAAACAACTCACGGCTCAAGCCGT
GTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

94.083

100

0.941
  comM Vibrio cholerae strain A1552

85.01

100

0.85
  comM Haemophilus influenzae Rd KW20

66.075

100

0.661
  comM Glaesserella parasuis strain SC1401

64.314

100

0.647
  comM Legionella pneumophila str. Paris

50

97.83

0.489
  comM Legionella pneumophila strain ERS1305867

50

97.83

0.489
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.094

100

0.442

Multiple sequence alignment