Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   FOB40_RS15740 Genome accession   NZ_CP044060
Coordinates   3432753..3434267 (-) Length   504 a.a.
NCBI ID   WP_150390104.1    Uniprot ID   -
Organism   Aeromonas veronii strain FDAARGOS_632     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3427753..3439267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB40_RS15715 (FOB40_15715) - 3428967..3429602 (-) 636 WP_042055347.1 nicotinamidase -
  FOB40_RS15720 (FOB40_15720) - 3429677..3430327 (+) 651 WP_139412081.1 NrtR DNA-binding winged helix domain-containing protein -
  FOB40_RS15725 (FOB40_15725) - 3430324..3430830 (+) 507 WP_150390101.1 DUF523 domain-containing protein -
  FOB40_RS15730 (FOB40_15730) - 3430755..3431720 (-) 966 WP_150390102.1 acyltransferase -
  FOB40_RS15735 (FOB40_15735) - 3431727..3432626 (-) 900 WP_150390103.1 acyltransferase -
  FOB40_RS15740 (FOB40_15740) comM 3432753..3434267 (-) 1515 WP_150390104.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  FOB40_RS15750 (FOB40_15750) ilvG 3434652..3436298 (+) 1647 WP_150390106.1 acetolactate synthase 2 catalytic subunit -
  FOB40_RS15755 (FOB40_15755) ilvM 3436295..3436573 (+) 279 WP_005342011.1 acetolactate synthase 2 small subunit -
  FOB40_RS15760 (FOB40_15760) - 3436586..3437530 (+) 945 WP_111900975.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54498.36 Da        Isoelectric Point: 7.6884

>NTDB_id=387268 FOB40_RS15740 WP_150390104.1 3432753..3434267(-) (comM) [Aeromonas veronii strain FDAARGOS_632]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPAALACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPDPQNAESLPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERG
ESSQQIRARVLAARERMLSRNGKLNNLLDSREIEDICRLSAQDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAGQSAI
GKEHLIEALGYRAMDRLLSRLRSS

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=387268 FOB40_RS15740 WP_150390104.1 3432753..3434267(-) (comM) [Aeromonas veronii strain FDAARGOS_632]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCCTCGGGATCGCGGCCCCGCAAGTTACAGTGGAAGTTCACCTCTCCAA
CGGCCTGCCCGCCTTCAACATGGTCGGCCTGCCGGAAACCTCGGTGAAGGAGTCGCGGGATCGGGTGCGCAGCGCCCTGC
TCAACGGCAATTTCGAGTTCCCGAGCAAACACATCACAGTCAATCTGGCCCCCGCCGATCTGCCCAAGGAGGGAGGCCGC
TTCGATCTGGCTATCGCTATCGGCATTCTCGCCGCTTCCAAGCAGATACCGGCAAAATATCTGCTCGATCACGAATTTTT
AGGGGAGTTGGCCCTGACAGGCGAAATTCGTCCCGTACTCGGGGTACTGCCTGCCGCACTCGCCTGCCGGGATGCGGGAC
GCACCCTGCTGGTACCGCGAGAGAACGGCCCGGAAGCCTCTCTCATTCAGGATGCCGAGGTGCGCACCGCCCACCAGCTG
CTGGCAGTCACCGCCTGGCTGGCAGGACAATACGAACTGCCGCTGCCGGATCCCCAAAACGCGGAGAGCCTGCCCGATGT
ACCAGATCTGCAGGATGTTATTGGTCAGTCTCAGGCCAAGCGGGCGCTGGAGATCGCCGCCGCCGGCAGCCACAACCTGC
TGTTCATCGGCCCGCCCGGTACTGGCAAGAGCATGCTGGCGAGCCGACTGCCCGGCATCTTGCCGCCGCTCAGCGAGCAG
GAAGCGCAGCAGACCGCCGCCATCCACTCCATCGGCGGCCTCACCCCACGCGCCGGCCACTGGCACCACAGACCCTATCG
CACGCCCCACCACAGTGCCTCCGCAGTGGCGCTGGTGGGTGGTGGCAGCCACCCGCGGCCCGGCGAAATTTCGCTGGCCC
ACAACGGGGTGCTGTTTCTCGACGAGCTGCCCGAATTCGAGCGCAAGGTGCTCGACTCCCTGCGTGAGCCGCTGGAGACG
GGCCACATCACCATCAGCCGGGCCGCCCGCCAGGTGGATTTTCCCGCCCGCTTCCAGCTGGTCGGCGCCATGAATCCCAG
CCCCTGTGGCCACTATGGCGACGGCCAGACCCGCTCCAGCCCGGATCAGATCTTACGCTACCTCGGCAAGCTCTCCGGCC
CCTTTCTCGACCGCTTCGACCTGACAGTTGAGGTGCCGCTGCTGCCCAAGGGGAGCCTGACCGGCAAGGCGGAGCGGGGG
GAGTCGAGCCAGCAGATCCGCGCTCGGGTGCTGGCGGCGCGAGAGCGCATGCTGAGTCGTAACGGCAAGCTCAACAACCT
GCTGGATAGCCGTGAGATAGAGGATATTTGCCGACTATCAGCGCAAGATGCCGAATTTTTGGAGAATGCCATCCAGAAGC
TGGGGCTCAGTATCCGGGCCTGGCACCGCATTTTGCGGGTGTCACGCACCATCGCCGATCTGGCGGGGCAATCCGCCATC
GGCAAGGAGCATCTTATCGAGGCGCTCGGCTACCGGGCCATGGACAGGCTGCTGTCGCGACTGCGCAGCAGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.347

99.603

0.631
  comM Haemophilus influenzae Rd KW20

61.66

100

0.619
  comM Vibrio campbellii strain DS40M4

62.151

99.603

0.619
  comM Glaesserella parasuis strain SC1401

60.947

100

0.613
  comM Legionella pneumophila str. Paris

50.794

100

0.508
  comM Legionella pneumophila strain ERS1305867

50.794

100

0.508
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.443

100

0.466

Multiple sequence alignment