Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   FHP22_RS00945 Genome accession   NZ_CP044018
Coordinates   195716..196858 (-) Length   380 a.a.
NCBI ID   WP_127800660.1    Uniprot ID   -
Organism   Acinetobacter indicus strain HY20     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 190716..201858
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FHP22_RS00915 (FHP22_00915) - 191032..192030 (-) 999 WP_127800666.1 pirin family protein -
  FHP22_RS00920 (FHP22_00920) - 192151..192759 (-) 609 WP_127800678.1 hypothetical protein -
  FHP22_RS00925 (FHP22_00925) - 192942..193484 (-) 543 WP_005181445.1 glutathione peroxidase -
  FHP22_RS00930 (FHP22_00930) - 193813..194724 (+) 912 WP_005181447.1 DMT family transporter -
  FHP22_RS00940 (FHP22_00940) - 195105..195671 (-) 567 WP_127800662.1 L-threonylcarbamoyladenylate synthase -
  FHP22_RS00945 (FHP22_00945) dprA 195716..196858 (-) 1143 WP_127800660.1 DNA-processing protein DprA Machinery gene
  FHP22_RS00950 (FHP22_00950) tsaP 196875..198032 (-) 1158 WP_127800658.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  FHP22_RS00955 (FHP22_00955) def 198152..198676 (+) 525 WP_005181462.1 peptide deformylase -
  FHP22_RS00960 (FHP22_00960) - 198767..199189 (+) 423 WP_016658991.1 DUF2946 family protein -
  FHP22_RS00965 (FHP22_00965) - 199263..201314 (+) 2052 WP_104503910.1 TonB-dependent copper receptor -

Sequence


Protein


Download         Length: 380 a.a.        Molecular weight: 42120.98 Da        Isoelectric Point: 6.9756

>NTDB_id=387048 FHP22_RS00945 WP_127800660.1 195716..196858(-) (dprA) [Acinetobacter indicus strain HY20]
MLNTISPGHLATIRLWYLVQHSLPSFYKLIRHFGSAAAATEAGNLQRWAELGLHQNHLQRARDFHQAQAQADFQHLLQRI
QQHTDFILIPEDVGYPTQLLPYADKPPILFGQGQAQPLLQPQVAIVGSRKASPHGRQVAYDFAYYLSEKGFFINSGLAQG
IDEAAHQGGLKHQRTIAVMGTGLDLTYPATHQGLRDQILQRHGTIISEFLPQTKPLQQHFPRRNRIVSGLSLGVIVAEAT
LDSGSLITAKLAAEQGKTVFAIPGHIYSEFHQGCHQLIREGAILVDHPEQVIEDLALPTQWLSQQQATLSATASAAAHPT
LPEHLLALYSQLDWVGKNMDQLASELQQETAHLTAQLMELELLGMAMQQSGLYLRCRPSQ

Nucleotide


Download         Length: 1143 bp        

>NTDB_id=387048 FHP22_RS00945 WP_127800660.1 195716..196858(-) (dprA) [Acinetobacter indicus strain HY20]
ATGCTGAATACGATATCACCCGGTCATCTCGCAACGATTCGCCTGTGGTATCTGGTTCAGCATTCACTCCCCAGCTTTTA
TAAATTAATCCGGCACTTCGGTTCGGCGGCTGCGGCCACCGAAGCCGGCAACCTGCAGCGCTGGGCAGAACTGGGACTGC
ATCAGAACCATCTGCAACGCGCACGGGATTTTCATCAAGCACAGGCACAAGCCGACTTCCAGCACTTGCTGCAGCGCATC
CAGCAACATACCGATTTTATTCTTATTCCCGAAGATGTCGGTTACCCCACCCAACTGCTGCCCTATGCCGATAAGCCACC
GATTTTATTTGGTCAGGGACAGGCGCAACCTTTACTTCAGCCACAAGTGGCAATTGTCGGCAGTCGCAAAGCCAGTCCGC
ATGGCCGGCAGGTGGCTTATGACTTTGCCTATTATTTAAGTGAAAAAGGCTTTTTTATTAACAGTGGCCTGGCGCAAGGC
ATTGATGAAGCAGCCCATCAGGGCGGCCTAAAACATCAACGTACCATTGCCGTGATGGGTACTGGTCTCGACCTCACCTA
CCCGGCCACACACCAGGGTCTGCGTGACCAGATTCTGCAACGGCATGGCACTATTATCAGTGAGTTCCTGCCACAGACCA
AACCGCTACAGCAGCATTTTCCACGGCGTAACCGCATTGTCAGTGGACTTAGCCTGGGAGTGATTGTGGCCGAAGCCACG
CTGGACAGCGGCTCGCTGATTACCGCCAAACTGGCGGCCGAGCAAGGTAAAACCGTGTTTGCCATTCCGGGACATATTTA
CAGTGAATTTCATCAGGGCTGCCATCAACTGATTCGGGAAGGCGCGATTCTGGTTGATCATCCGGAACAGGTCATTGAAG
ATCTGGCCTTGCCAACCCAATGGCTGAGCCAGCAGCAGGCGACCTTATCCGCTACAGCATCTGCAGCTGCCCACCCGACC
TTACCCGAACATCTGTTGGCCCTATACAGCCAGCTGGACTGGGTCGGTAAAAATATGGACCAGCTGGCCAGCGAACTGCA
ACAGGAAACCGCCCATTTAACCGCGCAGTTAATGGAACTGGAGCTGCTCGGAATGGCAATGCAGCAATCGGGGCTATATC
TGCGTTGTCGTCCATCACAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

69.231

99.211

0.687

  dprA Acinetobacter baumannii D1279779

68.966

99.211

0.684

  dprA Acinetobacter baylyi ADP1

64.211

100

0.642

  dprA Vibrio cholerae strain A1552

42.857

88.421

0.379


Multiple sequence alignment