Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   FHP22_RS00950 Genome accession   NZ_CP044018
Coordinates   196875..198032 (-) Length   385 a.a.
NCBI ID   WP_127800658.1    Uniprot ID   -
Organism   Acinetobacter indicus strain HY20     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 191875..203032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FHP22_RS00920 (FHP22_00920) - 192151..192759 (-) 609 WP_127800678.1 hypothetical protein -
  FHP22_RS00925 (FHP22_00925) - 192942..193484 (-) 543 WP_005181445.1 glutathione peroxidase -
  FHP22_RS00930 (FHP22_00930) - 193813..194724 (+) 912 WP_005181447.1 DMT family transporter -
  FHP22_RS00940 (FHP22_00940) - 195105..195671 (-) 567 WP_127800662.1 L-threonylcarbamoyladenylate synthase -
  FHP22_RS00945 (FHP22_00945) dprA 195716..196858 (-) 1143 WP_127800660.1 DNA-processing protein DprA Machinery gene
  FHP22_RS00950 (FHP22_00950) tsaP 196875..198032 (-) 1158 WP_127800658.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  FHP22_RS00955 (FHP22_00955) def 198152..198676 (+) 525 WP_005181462.1 peptide deformylase -
  FHP22_RS00960 (FHP22_00960) - 198767..199189 (+) 423 WP_016658991.1 DUF2946 family protein -
  FHP22_RS00965 (FHP22_00965) - 199263..201314 (+) 2052 WP_104503910.1 TonB-dependent copper receptor -

Sequence

Protein


Download         Length: 385 a.a.        Molecular weight: 42551.57 Da        Isoelectric Point: 8.8330

>NTDB_id=387049 FHP22_RS00950 WP_127800658.1 196875..198032(-) (tsaP) [Acinetobacter indicus strain HY20]
MKKVLKGTSSFRALGLKQQALALAVCFSFGVGAVSTVQAAPARNINPPTLQANAPNVYVVKKGDTLWDISKKFLQNPLRW
REIWASNKHVKNPHWIFPGDRLLMCTYDGRPIIGKDEGDGCEGIIRRYTGNTTSLQPQIRVESLNNTIPVIPLEYIQHWL
ERTSIIAPESLQQTPYILGTADQRVLAAKGQNVYARGQGLQVGQRYAVYREGEPYIFTDANGKKYNAGLELTQVASGIAV
RGENDITTLELTDTYNAEVRRGDRVLPEYDPMLPTLFYPTNAEHIATDGQVVRVMGSIGTAAKHSVVTIDRGQAHGVQSG
HVFAVTQKGEVVTDPKTRERVQLPGERIGYAMVFKTFDQLSYAYILDSELPIKVGAGIQPPIMED

Nucleotide


Download         Length: 1158 bp        

>NTDB_id=387049 FHP22_RS00950 WP_127800658.1 196875..198032(-) (tsaP) [Acinetobacter indicus strain HY20]
ATGAAAAAGGTTTTGAAGGGCACATCTTCTTTTCGTGCCTTGGGGTTAAAACAGCAGGCGCTGGCACTTGCTGTCTGTTT
CAGTTTTGGGGTGGGCGCAGTCAGTACTGTACAGGCCGCACCGGCACGCAATATCAACCCACCGACCTTACAGGCCAATG
CACCAAATGTGTATGTGGTGAAAAAAGGCGATACGCTGTGGGATATTTCCAAGAAGTTTCTGCAAAATCCGCTGCGCTGG
CGTGAAATCTGGGCCAGCAACAAGCACGTGAAAAATCCGCACTGGATTTTCCCGGGAGATCGCCTGCTGATGTGTACCTA
TGATGGCCGCCCGATCATTGGTAAAGATGAAGGTGATGGCTGTGAAGGTATTATCCGTCGTTATACCGGTAACACCACCA
GCCTGCAGCCGCAAATCCGGGTCGAGTCACTCAACAATACCATTCCGGTGATTCCACTGGAGTACATCCAGCACTGGCTG
GAACGCACCAGCATTATTGCCCCTGAATCTTTGCAACAGACGCCTTATATTTTAGGCACGGCGGATCAGCGTGTCCTGGC
GGCCAAAGGCCAGAATGTCTATGCCCGCGGTCAGGGTCTGCAAGTTGGCCAGCGTTATGCTGTGTATCGTGAAGGCGAAC
CGTATATCTTCACCGATGCCAACGGTAAAAAATACAATGCCGGTCTGGAGCTGACTCAGGTTGCATCCGGTATTGCAGTA
CGCGGTGAAAATGATATTACCACCCTGGAACTGACCGATACCTACAATGCCGAAGTGCGTCGTGGCGATCGTGTGCTGCC
AGAATATGACCCGATGTTACCAACCCTATTCTACCCGACCAATGCCGAACACATTGCAACAGATGGCCAGGTGGTACGCG
TGATGGGTTCAATTGGTACCGCAGCTAAACACAGTGTGGTCACCATTGACCGTGGTCAGGCGCACGGCGTGCAATCCGGT
CATGTATTTGCTGTAACTCAAAAAGGCGAAGTGGTCACCGATCCGAAAACCCGTGAACGGGTGCAGCTGCCAGGCGAGCG
TATTGGCTATGCCATGGTCTTTAAAACCTTTGACCAGCTCAGCTATGCCTATATTCTGGACAGCGAACTACCAATTAAAG
TCGGGGCCGGTATTCAGCCACCGATTATGGAAGATTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(58-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

66.234

100

0.662

Multiple sequence alignment