Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   F1728_RS08210 Genome accession   NZ_CP043930
Coordinates   2177346..2177843 (-) Length   165 a.a.
NCBI ID   WP_155363705.1    Uniprot ID   A0A6I6ACB7
Organism   Gimesia benthica strain E7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2172346..2182843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F1728_RS08195 (F1728_08140) - 2173115..2175091 (-) 1977 WP_155363703.1 hypothetical protein -
  F1728_RS08200 (F1728_08145) dnaB 2175140..2176570 (-) 1431 WP_155363704.1 replicative DNA helicase -
  F1728_RS08205 (F1728_08150) rplI 2176752..2177258 (-) 507 WP_145037632.1 50S ribosomal protein L9 -
  F1728_RS08210 (F1728_08155) ssb 2177346..2177843 (-) 498 WP_155363705.1 single-stranded DNA-binding protein Machinery gene
  F1728_RS08215 (F1728_08160) rpsF 2177927..2178343 (-) 417 WP_155363706.1 30S ribosomal protein S6 -
  F1728_RS08220 (F1728_08165) pth 2178469..2179035 (-) 567 WP_145037626.1 aminoacyl-tRNA hydrolase -
  F1728_RS08225 (F1728_08170) - 2179095..2179736 (-) 642 WP_155363707.1 50S ribosomal protein L25 -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 17067.71 Da        Isoelectric Point: 4.9528

>NTDB_id=386608 F1728_RS08210 WP_155363705.1 2177346..2177843(-) (ssb) [Gimesia benthica strain E7]
MASFNKVILVGNLTRDPQVRYTPGGSAVAEIGLAVNRSWFDKNSNSRKEETTFVDVTLWGRTAEVASEYLTKGRSVLIEG
RLQLDQWDDKESGQKRSKLKVVGENMTMLGGRGDGPGGGGGPSGGGGGGGGYGSRGGSSQGGGSSSPADSFYDSPGGMPD
DDVPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=386608 F1728_RS08210 WP_155363705.1 2177346..2177843(-) (ssb) [Gimesia benthica strain E7]
ATGGCCAGTTTCAACAAAGTCATCCTGGTAGGAAATCTGACTCGCGATCCGCAGGTGCGATACACGCCCGGAGGAAGTGC
GGTTGCGGAAATTGGTCTGGCAGTGAACCGAAGCTGGTTTGATAAGAATTCCAATTCCCGGAAGGAAGAGACAACGTTTG
TGGATGTGACCCTGTGGGGACGCACCGCAGAAGTTGCCAGCGAATATCTGACCAAGGGGCGTTCGGTGCTGATCGAAGGG
CGTTTGCAACTGGATCAGTGGGATGACAAAGAATCGGGCCAGAAACGCAGCAAGTTGAAAGTGGTTGGCGAAAACATGAC
CATGCTCGGCGGACGTGGCGATGGCCCCGGAGGCGGTGGTGGTCCCAGCGGCGGCGGCGGTGGCGGCGGCGGTTATGGCA
GCCGTGGCGGTTCCTCGCAGGGTGGTGGTTCATCCAGCCCGGCAGATTCCTTTTACGATTCACCAGGTGGAATGCCCGAC
GACGACGTGCCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I6ACB7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

44.751

100

0.491
  ssb Glaesserella parasuis strain SC1401

35.359

100

0.388
  ssb Neisseria meningitidis MC58

36.571

100

0.388
  ssb Neisseria gonorrhoeae MS11

36

100

0.382
  ssbA Bacillus subtilis subsp. subtilis str. 168

34.857

100

0.37

Multiple sequence alignment