Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   F1E05_RS03905 Genome accession   NZ_CP043929
Coordinates   814279..815787 (+) Length   502 a.a.
NCBI ID   WP_150046919.1    Uniprot ID   -
Organism   Methylomonas rhizoryzae strain GJ1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 809279..820787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F1E05_RS03885 - 811467..812414 (-) 948 WP_150046911.1 DUF58 domain-containing protein -
  F1E05_RS03890 - 812411..813337 (-) 927 WP_150046913.1 MoxR family ATPase -
  F1E05_RS03895 - 813441..814016 (+) 576 WP_232056771.1 MarR family winged helix-turn-helix transcriptional regulator -
  F1E05_RS03900 ubiK 814021..814272 (+) 252 WP_150046917.1 ubiquinone biosynthesis accessory factor UbiK -
  F1E05_RS03905 comM 814279..815787 (+) 1509 WP_150046919.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  F1E05_RS03910 pilQ 815853..818153 (-) 2301 WP_150046921.1 type IV pilus secretin family protein -
  F1E05_RS03915 - 818167..818715 (-) 549 WP_150046923.1 pilus assembly protein PilP -
  F1E05_RS03920 - 818719..819330 (-) 612 WP_150046925.1 type 4a pilus biogenesis protein PilO -
  F1E05_RS03925 - 819327..819899 (-) 573 WP_150046926.1 PilN domain-containing protein -

Sequence

Protein


Download         Length: 502 a.a.        Molecular weight: 54206.29 Da        Isoelectric Point: 7.7860

>NTDB_id=386587 F1E05_RS03905 WP_150046919.1 814279..815787(+) (comM) [Methylomonas rhizoryzae strain GJ1]
MSLAVVYSRGRTGIAAPLVTVEVHVGNGLPALNIVGLPEAAVKESKDRVRGAIINSQFEFPFQRITINLAPADLPKEGGR
FDLAIALGILAASGQIPKDGLARYEFVGELSLGGQLRPITGALPVAIQSRDAHRQLILPVENAAEATLISDIELLPAETL
LQVCVHLAGTHALDSYRTPLTSVEQEFALDFADVHGQYHVKRAMEIAAAGRHNLLMLGPPGTGKSMLAARLPTILPALTE
RQALETAAIASISDSGLDVSKWRQPPFRAPHHTASAAALVGGGSNPKPGEISLAHNGALFLDELPEFDRRVLEVLREPLE
TGHITISRANRQAEFPARFQLIAAMNPCPCGYLGDASGRCHCTSEQVARYRARVSGPLMDRIDMHLEVPRVPLAVLRVGD
STVEEASGEIRRRVIAARKLAELRQGKCNSELGAKEIKALCRLSDTGHQLLEQAMEKFGLSHRAYHRILKVARTVADLAD
SSAIETSHLSEAIGYRKLDRSR

Nucleotide


Download         Length: 1509 bp        

>NTDB_id=386587 F1E05_RS03905 WP_150046919.1 814279..815787(+) (comM) [Methylomonas rhizoryzae strain GJ1]
ATGTCGCTGGCGGTTGTCTACAGCCGTGGCCGAACCGGAATCGCCGCGCCGTTAGTGACGGTTGAAGTCCACGTCGGTAA
CGGCCTGCCGGCGTTGAACATCGTCGGCTTGCCCGAAGCGGCGGTTAAAGAAAGCAAAGACAGGGTGCGCGGCGCCATTA
TCAATTCCCAGTTCGAGTTTCCGTTTCAAAGAATCACAATCAATTTGGCTCCCGCCGACTTGCCGAAAGAAGGCGGGAGA
TTCGATTTGGCGATTGCGTTGGGCATTTTGGCGGCATCCGGGCAAATCCCCAAAGACGGCCTAGCTCGCTACGAGTTCGT
CGGCGAGTTGTCGCTGGGCGGTCAGCTGCGTCCGATCACCGGGGCATTGCCGGTTGCCATACAAAGCCGGGATGCGCATA
GGCAACTGATCCTGCCAGTAGAAAACGCGGCGGAAGCTACTTTGATCTCGGATATCGAGCTATTGCCGGCCGAAACCTTG
TTGCAAGTCTGCGTGCATTTAGCCGGTACCCACGCGCTGGATAGTTATCGGACGCCGTTAACTTCGGTCGAGCAGGAGTT
TGCGCTCGACTTTGCCGACGTGCACGGTCAATATCACGTGAAAAGAGCGATGGAAATCGCCGCCGCCGGGCGTCACAATT
TGTTGATGCTGGGACCGCCGGGTACCGGGAAGTCGATGTTGGCGGCGCGCTTACCGACCATATTGCCGGCGTTAACCGAA
AGACAGGCTCTGGAGACCGCGGCAATCGCCTCGATCAGCGACAGCGGTTTGGACGTATCGAAATGGCGTCAGCCGCCGTT
TAGAGCGCCGCATCACACGGCATCGGCGGCGGCCTTGGTTGGCGGCGGCAGCAATCCCAAGCCGGGCGAAATCTCATTGG
CGCACAATGGGGCCTTGTTTTTAGACGAATTGCCGGAGTTCGACCGTAGGGTTCTGGAGGTACTGCGCGAGCCTTTGGAG
ACCGGGCATATCACGATTTCCCGGGCGAATCGGCAAGCGGAGTTTCCGGCGCGCTTTCAATTGATTGCCGCGATGAATCC
TTGTCCGTGCGGTTATCTGGGCGATGCGTCCGGCCGCTGCCATTGTACCTCGGAGCAGGTGGCGCGTTACCGGGCTAGGG
TATCCGGGCCTTTGATGGATAGGATAGACATGCATTTGGAAGTGCCGCGGGTACCGTTAGCGGTGTTGCGGGTCGGCGAT
TCCACGGTGGAAGAGGCCAGTGGCGAAATTCGCCGCAGGGTAATCGCGGCCCGCAAGTTAGCCGAATTGCGTCAAGGTAA
ATGTAATAGCGAACTGGGTGCCAAGGAAATCAAAGCGTTGTGCCGTTTATCGGATACCGGACACCAGTTGTTGGAACAGG
CGATGGAAAAATTCGGCTTGTCGCACAGAGCCTATCACCGCATTTTGAAAGTGGCCAGGACGGTGGCCGATTTGGCCGAT
TCGAGTGCAATAGAAACGTCGCATTTGAGCGAAGCAATCGGCTACCGCAAACTGGATCGCAGTCGTTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-496)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

54.2

99.602

0.54
  comM Glaesserella parasuis strain SC1401

53.28

100

0.534
  comM Haemophilus influenzae Rd KW20

52.673

100

0.53
  comM Vibrio cholerae strain A1552

52.4

99.602

0.522
  comM Legionella pneumophila str. Paris

51.107

99.004

0.506
  comM Legionella pneumophila strain ERS1305867

51.107

99.004

0.506
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.047

100

0.476

Multiple sequence alignment